Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g315 ATGTTTCAGGCGTCTTCAGCACTTCAAACCACTGAGAAATCATTCTATGATGTTATTGGGGAGAATTATAGTAGTATCACTAGTTCTACTAGTGATGGTAACTTGGTGGAACATGTGTGGAATGGTGATCTTGGAGAGTCTGCTTCACTGTTCAGGAAGGGGGTTGAGGAAGCTAGTAAATTCCTTCCAAATAGTACTGGCTTGTTTGTTGATTTGGTGACAGAGAATAGTAGGGGGTTAGTGAAGCAAGATCCTAAGGATGTGGTTCAGGATGGTCAATCAAAAGGATCCAATACTGGAAAATCCCGTGGTAGGAAGAAAGGTGGCGGCAAGGACTTGGTGGACTTGACAACTCTACTGACTCTTTGCGCTCAAGCAGTTGCTGCTGATGATTGGAGGACAGCAAATGAGCAACTAAAGCAGATCAGACAGCATGCTTCTCCTACGGGTGATGGAAGGCAAAGAATGGCTCACTATTTTGCCAATGGTCTTGAGGCACGCATGGCTGGCTCTGGAACTCGGATTTATAAAGCAGTCATTACTAAGCCAACATCAGCTGCTATTGTCTTGAAAGCTTACCATCTACTTCTTGCTGTGCTCCACATTGTTGATTTTGGTATTCTCTATGGTTTCCAATGGCCTTCTCTCATACAACGTCTCGCTTCTAGGCCTGGTGGACCTCCCAAGCTTCGGATTACTGGAATTGATCTTCCACAACCAGGCTTCCGACCGGCAGAAAGGTGGGAAACAATTCAAGTTGAGGATCTTAAAATTGACAGTGATGAGCTGCTTGTTGTAAACTGTAATTGTAGATTTAGAAACCTACTTGATGAAACTGTAGTTGTGGAGAGTCCTAGGAATATTGTTCTGAATCTGATCAGGAAGATGAATCCTGATATTTTCATACAGGGAATTGTGAATGGGGGCTATGGTGCTCCCTTCTTTCTGTCACGATTCCGAGAGGCTCTCTTTCACTTTTCTGCCTTGTTTGATATACTTGAGGCTACTGTGCCTCGTCAGACTTTGGAGAGGACGCTGATTGAGAGAGAGATATTTGGTTGGGATGCAATGAACGTCATCGCATGTGAGGGCTCAGAAAGGATTGAGAGGCCAGAGACATACAGGCAGTGGCAAATTCGTAACCTGAGGGCTGGGTTTAGGCAGCTCCCTTTGGACCAGGAGATTTTTAATATTGCAAAAGAGAAGGTCAAATTATGGTATCACAAAGACTTTGCGGTTGACCAAGATGGCCAGTGGTTGCTACAAGGATGGAAGGGGCGCATTATTTTTGCAATCTCTTCTTGGAAGGCTGTTCAGTAA 1320 44.55 MFQASSALQTTEKSFYDVIGENYSSITSSTSDGNLVEHVWNGDLGESASLFRKGVEEASKFLPNSTGLFVDLVTENSRGLVKQDPKDVVQDGQSKGSNTGKSRGRKKGGGKDLVDLTTLLTLCAQAVAADDWRTANEQLKQIRQHASPTGDGRQRMAHYFANGLEARMAGSGTRIYKAVITKPTSAAIVLKAYHLLLAVLHIVDFGILYGFQWPSLIQRLASRPGGPPKLRITGIDLPQPGFRPAERWETIQVEDLKIDSDELLVVNCNCRFRNLLDETVVVESPRNIVLNLIRKMNPDIFIQGIVNGGYGAPFFLSRFREALFHFSALFDILEATVPRQTLERTLIEREIFGWDAMNVIACEGSERIERPETYRQWQIRNLRAGFRQLPLDQEIFNIAKEKVKLWYHKDFAVDQDGQWLLQGWKGRIIFAISSWKAVQ* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3182600 3184550 + Vvi13g315 Vvi13g315 774101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g315 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 245 438 IPR005202 -
Vvi13g315 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 200 247 IPR005202 -
Vvi13g315 439 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 94 198 IPR005202 -
Vvi13g315 439 MobiDBLite consensus disorder prediction 81 109 - -
Vvi13g315 439 Pfam GRAS domain family 245 436 IPR005202 -
Vvi13g315 439 Pfam GRAS domain family 117 196 IPR005202 -
Vvi13g315 439 Pfam GRAS domain family 199 240 IPR005202 -
Vvi13g315 439 ProSiteProfiles GRAS family profile. 107 436 IPR005202 -
Vvi13g315 439 PANTHER SCARECROW-LIKE PROTEIN 14 200 247 - -
Vvi13g315 439 PANTHER SCARECROW-LIKE PROTEIN 14 94 198 - -
Vvi13g315 439 PANTHER SCARECROW-LIKE PROTEIN 14 245 438 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g472 Vvi13g315 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13873 PF03514 GRAS 3.30E-50 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g315 - - vvi:100241120 641.343