Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g322 ATGAGTTTTGTTTTTCGAGGGAGTCGAGCAGACATAGAAAGTGGATTTCCAGGATTTATTCCTGAGAGGCGTGCAGTGCGTGTTCATGCAGCTCGCCCTGTTAATACCAACTCGCTTGCTTTTCTGGTCACAGTTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGATCTGGCTGGTTCTTGGCATCTTTCTGATGGCCACAACCCTCAGGATGTATGCAACTTGTCAGCAACTTCAAGCTCAGGCACAAGCTCATGCTGCAGCAGCCAGTGGTCTTCTTGGTCACACAGAATTGCGGTTGCATATGCCACCATCCATAGCACTTGCAACAAGAGGGCGTTTACAAGGCCTTAGGCTCCAACTTGCACTTCTTGACAGGGAATTTGATGACCTAGATTATGAAACTTTGAGAGCACTGGATTCTGAGAATGTACCTACAACTCCTTCAATGAGCGAGGAAGAGATAAATGCTCTTCCTGTGCACAAGTACAAGGTTGCTGGCACTCAAGGTGGTGGCTCATCAATGCAACAGGGCTCATCTTCGGCCTCAGCTGAGAAGAAACAAGACATTAACAACGCGGTTGCGAGCACAAAGGCCCCAGATGACGAATTGACTTGCAGTGTTTGCTTGGAGCAAGTTAATGTGGGAGAATTAATCCGTAGCTTACCATGTTTGCATCAGTTCCATGCAAACTGCATTGACCCATGGCTAAGGCAACAGGGAACATGTCCTGTGTGTAAATTTAGAGCAGCACCAGGTTGGCAAGAAAATGGACAAGGTGGAATGGATGCTTCTTACATGGTTTGA 828 46.62 MSFVFRGSRADIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNFLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGSSMQQGSSSASAEKKQDINNAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3260895 3269116 - Vvi13g322 Vvi13g322 774108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g322 275 SUPERFAMILY RING/U-box 205 257 - -
Vvi13g322 275 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Vvi13g322 275 CDD RING-H2_PA-TM-RING 212 254 - -
Vvi13g322 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Vvi13g322 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 275 - -
Vvi13g322 275 MobiDBLite consensus disorder prediction 173 195 - -
Vvi13g322 275 MobiDBLite consensus disorder prediction 176 195 - -
Vvi13g322 275 Pfam Ring finger domain 212 254 IPR001841 -
Vvi13g322 275 PANTHER TARGET OF ERK KINASE MPK-1 1 275 - -
Vvi13g322 275 SMART ring_2 213 253 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g481 Vvi13g322 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g322 K16283 - vvi:100246103 496.123