Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g330 ATGGCAGAAGCTCTCAAGCTCTTCTGGGTCTTCGTCTTTTTCCTCTCAAACCCGGTTCTCTCCCAGCTGGATGAGTTCTTCTATGACAGCTTCCATGGTGCAGGGAATAACTTGAGTCTAAACGGTGTTGCAAAGATTGAGAAGAATGGCATGCTTCGCTTGACGAACGATGTCGCTAGATGGTTTGGTCGTGGCTTTTATCCGTCTCCGATCCGGTTCAAGAACTCCAGTGGTGGGAAAGCTTTCTCCTTCTCAACAGCCTTTGCTTTCGCAATTGTGCCCCAGTATCCGACACTGGGAGGCCATGGGCTTGCTTTTGCGATTACATCCACGAAAGAGCTCCCAGGGGCTCTTCCCAGACAGTATCTAGGTCTGCTCAATGCCACCGACAATGGGAATTCAACCAACCATGTGTTTGCTGTGGAGTTCGACACTGTTCAGGACTTTGAATTCAATGATATCAGTGATAATCATACAATTCAGGCATGGATAGATTATGATGGACAAAGGGATCAGTTGAATGTATTCCTTTCGCCTCATTCAACGAAACCCACCTCCCCAATCTTGTCTTGCGGTGTGAATCTTTCATCAATCCTCAAGGAATTTATGTATGTGGGCTTCTCTGCTTCCACTGGTCTTCTTGCCAGCTCTCACTATGTCTTGGGATGGAGGTTCAAGATGAACGGTGTGGCAGAATCACTGGATCTCTCATCCCTCCCTAAGCTCCCTGGCCCTAAAAGGAACAATACACCTTTAATTATAGGTGTTTCTGTTGCTGCTACTTCTATGATAGTTTTCGCAGTTGCCTTGGCTTTCTATCTGATCAGAAAGATAAAAAATGCGGATGTGATTGAGGCGTGGGAGCTCGATATTGGCCCACACAGATTCTCCTACCAAGAGCTGAAGAAGGCGACCAGGGGTTTTAGGGACAAAGAGCTAATTGGGTTTGGTGGATTTGGCAAGGTTTATAAGGGAACTCTACGGAATTCCAACACTCAAGTTGCAGTTAAACGAATTTCGCACGAATCAAAACAGGGTATGAGGGAATTTGTTTCTGAAATTGCTAGTATTGGCCGTCTTCGCCACAGGAACTTGGTTCAGCTCCTAGGATGGTGTCGTAGAAGAGGTGATTTGCTACTTGTCTATGATTATATGCCTAATGGAAGCTTGGATAAACTCGGCGATTTTGGCCTTGCTAAGTTATATGAGCACGGCTCAAACCCGAGCACCACAAGGGTTGTGGGCACACTGGGGTATCTGGCACCAGAGCTTACACGCACAGGGAAGCCAACAAGAAGTTCGGACGTGTTTGCATTTGGTGCATTGTTACTAGAGGTGGTTTGTGGTAGAAGACCTGTGGAGGCCAAAGCTCTGCCTGAAGAGCTGATATTGGTGGATTGGGTGTGGGAGAGGTGGAGGGAGGGTGCAATTCTTGATGTGGTGGATCCAAGATTGAAGGGTGAGTATGATGAAGTAGAGGTAGTGGTGGTGCTGAAACTGGGTTTGATGTGTTCCAACAATTCCCCTGCTGTGCGCCCCTCTATGAGGCAGGTTCTAAGGTACTTGGAAGGGGAGGTGGCCTTGCCGGAGGAGTTGAGTGCACCAGATGCATATGATAAAAAGGGTGGTGATTTCATTTCGGGAAATGATAGTTTTCATTTCAATTTAAATTTTATTAGACATCCAATACTGTTGAGTCATCCTAACTTCACACAAGCCATCACTGGCCTCATACCTCGTTTACATTCTGTGGTTGGGTCTCTGAAAAATGCAACATAA 1779 46.54 MAEALKLFWVFVFFLSNPVLSQLDEFFYDSFHGAGNNLSLNGVAKIEKNGMLRLTNDVARWFGRGFYPSPIRFKNSSGGKAFSFSTAFAFAIVPQYPTLGGHGLAFAITSTKELPGALPRQYLGLLNATDNGNSTNHVFAVEFDTVQDFEFNDISDNHTIQAWIDYDGQRDQLNVFLSPHSTKPTSPILSCGVNLSSILKEFMYVGFSASTGLLASSHYVLGWRFKMNGVAESLDLSSLPKLPGPKRNNTPLIIGVSVAATSMIVFAVALAFYLIRKIKNADVIEAWELDIGPHRFSYQELKKATRGFRDKELIGFGGFGKVYKGTLRNSNTQVAVKRISHESKQGMREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDYMPNGSLDKLGDFGLAKLYEHGSNPSTTRVVGTLGYLAPELTRTGKPTRSSDVFAFGALLLEVVCGRRPVEAKALPEELILVDWVWERWREGAILDVVDPRLKGEYDEVEVVVVLKLGLMCSNNSPAVRPSMRQVLRYLEGEVALPEELSAPDAYDKKGGDFISGNDSFHFNLNFIRHPILLSHPNFTQAITGLIPRLHSVVGSLKNAT* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3340691 3342959 - Vvi13g330 Vvi13g330 774116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g330 592 Pfam Protein tyrosine and serine/threonine kinase 311 392 IPR001245 GO:0004672|GO:0006468
Vvi13g330 592 Pfam Legume lectin domain 25 158 IPR001220 GO:0030246
Vvi13g330 592 Gene3D Phosphorylase Kinase; domain 1 293 381 - -
Vvi13g330 592 Gene3D - 23 157 - -
Vvi13g330 592 ProSitePatterns Protein kinases ATP-binding region signature. 314 337 IPR017441 GO:0005524
Vvi13g330 592 Gene3D - 158 247 - -
Vvi13g330 592 Gene3D Transferase(Phosphotransferase) domain 1 382 537 - -
Vvi13g330 592 CDD lectin_legume_LecRK_Arcelin_ConA 25 229 IPR001220 GO:0030246
Vvi13g330 592 ProSiteProfiles Protein kinase domain profile. 308 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g330 592 PANTHER - 3 158 - -
Vvi13g330 592 PANTHER - 159 392 - -
Vvi13g330 592 PANTHER - 392 542 - -
Vvi13g330 592 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 159 392 - -
Vvi13g330 592 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 392 542 - -
Vvi13g330 592 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 3 158 - -
Vvi13g330 592 SUPERFAMILY Protein kinase-like (PK-like) 289 534 IPR011009 -
Vvi13g330 592 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 245 IPR013320 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g769 Vvi13g330 ECH
Vvi6g491 Vvi13g330 ECH
Vvi8g771 Vvi13g330 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76164 PF00139 Lectin_legB 9.30E-38 CL0004 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g330 - - vvi:100263312 958.747