Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g332 ATGACAGGGATTGGTGCTTCATGTGGTGCGTGCAAGTTCTTGAGGAGAAGGTGCACGAGTGACTGTGTTTTTGCCCCTCACTTCTGTTATGACCAGGCTGCATCCCATTTTGCGGCAGTGCACAAGGTGTTTGGTGCCAGCAATGTCTCTAAGCTATTGCTACACCTTCCCTTGCATAACCGAGGCGAAGCTGCTATCACAATCTCTTATGAAGCACTCGCTCGGATGCGGGATCCTGTCTATGGTTGTGTCGCTCATATCTTTGCACTCCAACAACAGGTTGCCAACCTACAAGAGGAGATAGAAATTCTAGGGAACCACATGGCTACTTTTGCTCCTGATACTGTTACTGGTGAACATTATGGAGCAACTAATAACCTTAACACTGGCCTGCAATTTTCTTCACAAACCGACACTCTGAATATGCAAGATTATCTCAACCAACAGGCTCTGCTACTATCCCATGCAGGGAATGCAACTGCAAATCAGGCCTTTGACAGCCTAATGAATGAACAGCCACCTCCTTTGTATGGATGGGAAAACCAGAACTTTTTCTGCGACTCCGACGCAACCCCATTAGAGAGACTCTTTGAAGGAATTGACCAAGAGTTCTCTGCCTATTACCCATGGTCGGACAACACTACCTATCCCAAAAACTGA 660 46.82 MTGIGASCGACKFLRRRCTSDCVFAPHFCYDQAASHFAAVHKVFGASNVSKLLLHLPLHNRGEAAITISYEALARMRDPVYGCVAHIFALQQQVANLQEEIEILGNHMATFAPDTVTGEHYGATNNLNTGLQFSSQTDTLNMQDYLNQQALLLSHAGNATANQAFDSLMNEQPPPLYGWENQNFFCDSDATPLERLFEGIDQEFSAYYPWSDNTTYPKN* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3355780 3356735 + Vvi13g332 Vvi13g332 774118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g332 219 Coils Coil 87 107 - -
Vvi13g332 219 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vvi13g332 219 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vvi13g332 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 216 - -
Vvi13g332 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 216 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13875 PF03195 LOB 1.00E-35 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g332 K13945 - vvi:100241046 458.759