Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g335 ATGACGCATCGTTGGTGGGCCGGGAATGTGGCCATGCGAGACCCTATGTCCTCGGCTCCGTCGCTTCACCTCAGAAACACCGAAGATGACCAGGGTGGATTGAACCGCCTTGGACCCAGAAGAGAGCAAGAGTTCATGGACAATAACAACAACAACACTACCACCACCACCAACACGACCGCCACAAATAGCAACAGTGAGCAGAACGCTGGCGGCCACGAAATCGCCGAACCTAGTAGTGCTGGTCGCCGGCCCAGAGGCCGACCGCCCGGTTCAAAAAACAAGCCGAAGCCTCCGATAGTCATTACTAAAGAGAGCCCAAATGCGCTCAGAAGCCATGTATTAGAAATCAGCAGCGGAAGCGACATCGCGGAGAGTATTGCCAACTTTGCTCAGCGCCGCCACCGTGGGGTCTCGGTCCTCAGTGCCAGCGGCATTGTCAACAATGTCACCCTCCGGCAACCGGCAGCTCCAGGAGGCGTAATCACACTTCAAGGCAGATTTGAGATACTGTCTCTATCGGGAGCATTCTTGCCAGCGCCATCCCCACCGGGGGCTACTGGGCTGACGGTCTATTTGGCCGGAGGGCAAGGGCAGGTGGTAGGTGGAAGCGTTGTGGGTGCGCTTATGGCTTCGGGCCCAGTGATTGTGATTGCTGCCACCTTTTCCAATGCGACTTTCGAGCGTTTGCCGCTTGAAGATGAGCCAGCAAATGAAGGAATACAAATGCCACAAACATCAGGGGTGAATTCAGGAACTGGTGGCACTTCAGCACCTCAATCTCATGGTTTGGTCGATCCATCTTCCATGCCCATCTACAATCTCCCCCCCAATCTTCTACCCAATGGACAAATGCCCCATGACGTTTTTTGGGCACCTCCTCCACGTCCACCTCCTTACTAA 903 55.04 MTHRWWAGNVAMRDPMSSAPSLHLRNTEDDQGGLNRLGPRREQEFMDNNNNNTTTTTNTTATNSNSEQNAGGHEIAEPSSAGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDIAESIANFAQRRHRGVSVLSASGIVNNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGSVVGALMASGPVIVIAATFSNATFERLPLEDEPANEGIQMPQTSGVNSGTGGTSAPQSHGLVDPSSMPIYNLPPNLLPNGQMPHDVFWAPPPRPPPY* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3393813 3396178 - Vvi13g335 Vvi13g335 774121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g335 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Vvi13g335 300 MobiDBLite consensus disorder prediction 240 264 - -
Vvi13g335 300 MobiDBLite consensus disorder prediction 234 268 - -
Vvi13g335 300 Gene3D - 110 239 - -
Vvi13g335 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 237 - -
Vvi13g335 300 CDD DUF296 111 194 IPR005175 -
Vvi13g335 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 299 - -
Vvi13g335 300 MobiDBLite consensus disorder prediction 44 73 - -
Vvi13g335 300 MobiDBLite consensus disorder prediction 13 103 - -
Vvi13g335 300 ProSiteProfiles PPC domain profile profile. 107 245 IPR005175 -
Vvi13g335 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 299 IPR014476 GO:0003680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g335 - - vvi:100261537 493.426