Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g345 ATGGAGGACGCTGTATCGATACATCCATCGTTCTGGGGCCAAGACGCCCAAAATTGTACTGGATTACACTACTACGGCGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAAGTGCAAAGATCGGATGCATGAGATTGCAAAAGAGGAAATCGAGAGATGTGGGCAATCATGGGAACAGGTGATGGAGCGAAGCTTCTCGCGCATGGACAAGGAGGTGGTAGAATGGTGTAATGGTCAGTGGAGCTCGAATTGCAGGTGCGAGCTTCGGACGCCGCAGTGCGACGCAGTTGGATCTACGGCCGTTGTTGCGATTGTAACGCCGGAGAAGGTTGTCGTTTCTAATTGTGGTGATTCCCGCGCCGTTCTTTGCCGTAACGGCGTCGCCATTCCTCTGTCATCCGACCACAAGCCTGATCGACCCGATGAACTGCTACGGATCCAGGCCGCCGGCGGTCGTGTAATATATTGGGATGTTCCACGGGTTCTCGGAGTCCTAGCCATGTCCAGAGCTATAGGTGACAATTACTTGAAACCGTACGTAATTTCGGAACCGGAGGTGACGACATGGGACCGAAGCCCAGAGGACGAGTGTTTGATCCTGGCAAGCGACGGACTATGGGACGTAGTGTCCAACGATACAGCATGCGGAGTGGCACGTATGTGTCTGAATGCGCAGGCGCCGCCGTCTCCGCCGAGCTCCGACAAAGCTTGCTTAGACGCGTCTATGCTGCTGACGAAGTTGGCCTTGGCTCGGGATAGTGCGGATAACGTCAGCGTGGTTGTAGTTGACCTGAGAAACAAATAA 810 54.2 MEDAVSIHPSFWGQDAQNCTGLHYYGVYDGHGCSHVAMKCKDRMHEIAKEEIERCGQSWEQVMERSFSRMDKEVVEWCNGQWSSNCRCELRTPQCDAVGSTAVVAIVTPEKVVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRIQAAGGRVIYWDVPRVLGVLAMSRAIGDNYLKPYVISEPEVTTWDRSPEDECLILASDGLWDVVSNDTACGVARMCLNAQAPPSPPSSDKACLDASMLLTKLALARDSADNVSVVVVDLRNK* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3477278 3479749 + Vvi13g345 Vvi13g345 774131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g345 269 CDD PP2Cc 1 266 IPR001932 -
Vvi13g345 269 Pfam Protein phosphatase 2C 22 259 IPR001932 -
Vvi13g345 269 Gene3D - 1 269 IPR036457 -
Vvi13g345 269 ProSiteProfiles PPM-type phosphatase domain profile. 1 266 IPR001932 -
Vvi13g345 269 SMART PP2C_4 1 264 IPR001932 -
Vvi13g345 269 SUPERFAMILY PP2C-like 1 268 IPR036457 -
Vvi13g345 269 ProSitePatterns PPM-type phosphatase domain signature. 24 32 IPR000222 GO:0043169
Vvi13g345 269 PANTHER PROTEIN PHOSPHATASE 2C 37 1 268 - -
Vvi13g345 269 PANTHER ALPHABET, ISOFORM E-RELATED 1 268 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g522 Vvi13g345 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g345 K14497 - vvi:100247958 540.806