Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g355 ATGCCTAACCTGCTCCTCTTCACGGCGGCCCTGCTACTCTGCGCAGTGTGCGCAATGGCAGCCAATCGCTGCCCGGACTGCGGCAACACTTCTGTGCCCTACCCGCTCAGCACCGGAGCCGACTGCGGCGACCAAGAGTACAAGATCCGGTGCGATGCGGGCACACTCAGATTCGATACGCTCAACTCTTCCTACTCCATCTCATCCATCACTCCTCAAATCCAACGGTTCGTGATCCGGCCGGCGAGCTTCGCCGGTAACACCTGCGTCACCACCGATCTCCCCAACCAGGGAATCCAGCTCAACGAGAGCCTTCCCTTCAACGTCACCAGCAGCAACACCATCCTGTACCTCAACTGTACGGACACGCTTCTCCGGTCGCCGTTGAACTGCTCCTCCATCAGCCTCTGCCACACTTACATCAACGGCACACGAGACGCGGCAGCGTGCGAGGACGCGCCTATTTGCTGCACGTTTAAGGCGGGTGGTTCTACGACGTCGCATTCGATACGGGTTCGCGACGCGGGGTGCAGAGCTTATCGGAGTTTCGTGAACCTGGACGCGAGTACTCCGGTGAACCGTTGGCCAGAACCAGGCGTGGAGATCCAGTGGGTGTCTCCGAGGGAACCGGTTTGCACGTCCCAATCTGACTGCACCGATGGGATGAACTCCACTTGTGGGCCGGACCCAGCCACTGCTGGGGTGAGCCGGTGCTTTTGCAAATCAGGACTTTGGTGGGATCCAGTTGGTGGATTATGCGCACAGAATGTGACGTGTCAAGATCCAGATGGTTGTGGTTCCACAAACAAGACTCCACTCATAGCAGGTTTAACAGTAGGCATCGGTGCAGCCCTGATTGCAGCGGTCATCGCTATTCTAGTTTACAGACGGCACCGGCGCATCAAGGAAGCACAAGACCGGCTGGCAAGAGAGAGAGAGGAGATCCTAAACGCCAATGGCGGTGGCAAATTCGCCAAAAACTTCACGGGCAAAGAGATAAAGAGAGCAACAAACAGTTTCTCCCACGACCGCCTGCTCGGGGCTGGCGGCTATGGTGAAGTCTATAAAGGCATCCTTGATGATGGGACCATCGTTGCTATCAAATGCGCTAAGCTCGGCAACGCAAAAGGCACTGATCAGGTCCTCAATGAGGTGGGGATTCTTTGCCAAGTGAACCACAGAAGCCTTGTCCGCCTTCTAGGCTGCTGTGTGGAGCTGGAGCAGCCGATCATGGTTTACGAGTTCATCCCAAATGGGACTCTTCTGGAACATTTGCAAGGCCAACGGCCTGGTGGCCGGGGTTCACTTACATGGAGTCATCGCCTCCGCATTGCCCATGACACGGCTGAGGGTCTGGCTTACCTCCATTCCTCTGCAGTTCCCCCAATCTATCATCGAGATGTCAAATCCAGCAACATTTTGCTTGATGAGAAGATGAATGCTAAGGTTGCAGATTTCGGGTTATCTAGGTTGGCTCATACTGATATGAGTCATGTATCCACATGTGCTCAAGGAACTCTTGGATATCTCGATCCTGAGTATTACAGGAACTATCAGTTGACAGATAAGAGTGATGTTTATAGCTTTGGAGTAGTGTTGTTGGAGCTGTTAACATCGCAGAAAGCCATTGATTTTAATCGACCCGCTGATGATGTGAACTTGGCAGTTTATGTGCAGAGGACAGTGGAGGAGGAGAGGTTGATGGATGCCATTGATCCATTACTCAAAGAGCAGGCCAGCAGTTTGGAGCTTGAGACCATGAAGGCTATGGGATTTCTGGCCGTGGGTTGCTTGGAAGAACGAAGGCAAAATCGACCGTCAATGAAAGAAGTTACAGAGGAGATTGGGTATATCATAAGTATTGCAACAGCAAAGGTGGTAGAGCAGAAGAAGCTTCACTGCTTCACAATAATTTCTTTGGGCTTCTTGCTTCCTTTAGGTTTGTCAGAGATCATTTCTGCGCTCTTTCTTGCTTCCACTGGCCTCATCAGAGTAATTTTGCTATCCTTCTTGTTTCCCATTGTTTTCACCAGAGAAGGCTCTCCTGTGGGTTCTGAAATGATAATGATATGA 2073 52.15 MPNLLLFTAALLLCAVCAMAANRCPDCGNTSVPYPLSTGADCGDQEYKIRCDAGTLRFDTLNSSYSISSITPQIQRFVIRPASFAGNTCVTTDLPNQGIQLNESLPFNVTSSNTILYLNCTDTLLRSPLNCSSISLCHTYINGTRDAAACEDAPICCTFKAGGSTTSHSIRVRDAGCRAYRSFVNLDASTPVNRWPEPGVEIQWVSPREPVCTSQSDCTDGMNSTCGPDPATAGVSRCFCKSGLWWDPVGGLCAQNVTCQDPDGCGSTNKTPLIAGLTVGIGAALIAAVIAILVYRRHRRIKEAQDRLAREREEILNANGGGKFAKNFTGKEIKRATNSFSHDRLLGAGGYGEVYKGILDDGTIVAIKCAKLGNAKGTDQVLNEVGILCQVNHRSLVRLLGCCVELEQPIMVYEFIPNGTLLEHLQGQRPGGRGSLTWSHRLRIAHDTAEGLAYLHSSAVPPIYHRDVKSSNILLDEKMNAKVADFGLSRLAHTDMSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRPADDVNLAVYVQRTVEEERLMDAIDPLLKEQASSLELETMKAMGFLAVGCLEERRQNRPSMKEVTEEIGYIISIATAKVVEQKKLHCFTIISLGFLLPLGLSEIISALFLASTGLIRVILLSFLFPIVFTREGSPVGSEMIMI* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3570900 3573648 + Vvi13g355 Vvi13g355 774141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g355 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vvi13g355 690 SUPERFAMILY Protein kinase-like (PK-like) 325 613 IPR011009 -
Vvi13g355 690 PANTHER OS05G0318100 PROTEIN 14 624 - -
Vvi13g355 690 CDD STKc_IRAK 346 615 - -
Vvi13g355 690 ProSiteProfiles Protein kinase domain profile. 340 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g355 690 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 624 IPR045274 GO:0007166
Vvi13g355 690 Gene3D Phosphorylase Kinase; domain 1 301 415 - -
Vvi13g355 690 Coils Coil 301 321 - -
Vvi13g355 690 Pfam Protein tyrosine and serine/threonine kinase 343 614 IPR001245 GO:0004672|GO:0006468
Vvi13g355 690 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vvi13g355 690 Gene3D Transferase(Phosphotransferase) domain 1 416 636 - -
Vvi13g355 690 SMART serkin_6 340 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g783 Vvi13g355 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76165 PF07714 PK_Tyr_Ser-Thr 4.80E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g355 - - vvi:100246196 1237.25