Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g356 ATGGTCTCCACTGAAGAGATTCTTCTTGAAAGACCTAGAGCTCCGGGTACCAAAGCAGAAGAAACCAAGATTGCTGGAGACTCCTTGGCTCAGCTTGGAAAGGGAGGTGCTGTTCTCATGGTGTGCAGAACTTGTGGTAAGAAAGGTGACCATTGGACATCTAGATGCCCATACAAGGATCTCGCAGCACAAACTGATGCCTTCGTTGACAAACCTCCCGCTGCCGAGACCACTGTGGCTACTACAGGCACTGGCAAAGCCGCTTATGTGCCTCCAGGCATGAGACCTGGTGCAGAGAGAGTTGGATCAGATATGAGGCGCAGGAATGAAGAGAATTCAGTTCGGGTCACCAACCTATCAGAGGACACAAGGGAGCCTGACTTGCATGAGCTATTCCGCACATTTGGCCCAGTAAGTCGGGTCTACGTGGCGATTGACCAAAAGACCGGCATGAGCAGAGGTTTTGGTTTTGTCAATTTTGTAAACAAGGAAGATGCAGAGAGGGCTATCAACAAGCTGAATGGGTATGGTTATGACAATCTCATCCTCAGAGTGGAATGGGCCACACCCAGGACAAACTAG 582 50.0 MVSTEEILLERPRAPGTKAEETKIAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAAQTDAFVDKPPAAETTVATTGTGKAAYVPPGMRPGAERVGSDMRRRNEENSVRVTNLSEDTREPDLHELFRTFGPVSRVYVAIDQKTGMSRGFGFVNFVNKEDAERAINKLNGYGYDNLILRVEWATPRTN* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3574679 3578959 - Vvi13g356 Vvi13g356 774142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g356 193 SMART rrm1_1 113 186 IPR000504 GO:0003723
Vvi13g356 193 Pfam Eukaryotic translation initiation factor 3 subunit G 2 61 IPR024675 -
Vvi13g356 193 Gene3D - 85 193 IPR012677 -
Vvi13g356 193 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 193 - -
Vvi13g356 193 SUPERFAMILY RNA-binding domain, RBD 110 192 IPR035979 GO:0003676
Vvi13g356 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Vvi13g356 193 CDD RRM_eIF3G_like 113 188 IPR034240 -
Vvi13g356 193 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 193 - -
Vvi13g356 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g524 Vvi13g356 ECH
Vvi8g784 Vvi13g356 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g356 K03248 - vvi:100251333 380.948