Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g367 ATGGAGAGGAGAGAGAGAGGTCATGGAGAAGAAGGAGAAGGTGGTGATGAGAAGTGGGTTCATGATTCATCTGTGGATTATAAAGGAAGAGTTCCTCCTCGAGCTTCAACTGGCGTGTGGAAAGCTGCCTCCTTCATTATCACAATTGAGCTTAGTGAGAGGCTGAGCTACTTTGGATTAGCAACCGATCTCTTCAATTACTTCTCTAAAGTGCTTAATCAAGACTCCAAAACAGCAGCAAAGAATGTAAATTACTGGATAGGAGTCACAACCGTGATGCCCCTACTGGGAGGATTTCTTGCCGATGCCTATACTGGTCAATTTTATACCGTCCTCCTTTCATCCATCATCTATGTCATGGGTTTAAGCCTCTTGACAATGTCTCAGTTCATCCCAAGGCTAAAACCATGCAGCAATAGGAAACACTGTGGGCATCCTAGGAAGGTTCATGAGGTGGTGTTCTTTCTTGGCATGTACTGTGTCTCTCTAGGAACTGGGGGACACAAGCCCTGCTTGGAAAGCTTTGGTGCTGATCAGTTTGATGACAATCACCCTGTCGAGAGGAAGAAGAAAATGTCTTACTTTAACTGGTGGAATTTTGCATTATGTTGTGGTCTTTTAGCTGGTGTAACTGTTATAGTTTATGTTGACGAGTATGTGGGCTGGGGTGCTTCCTATCTCATTCTCACGTCTTGTATGGCCTTTACCATCCTAACCTTCTATGCCGGGAAGCGTTTCTACCGCTATAGGTTGCCTGAAGGGAGTCCCTTGACCCCCATGTTGCAGGTTTTGGTTGCAGCCATAGCCAAGAGAAATCTACCTTATCCTTCCAATCCTGATTTGTTGTATGAAGTTCCCAAGTCACACAAGTCCAAAGGAAGGCTTCTATGCCATACAAATAAACTTAGGTTTCTTGACAAAGCTGCAATAATTGAAGACAAGGAAAGCCTGCAGTCAGTGGAGAAGAAACAAAGTCCATGGAGACTAGCCACAGTGACGAAAGTTGAGGAGATGAAGCTTGTTCTGAACATGATCCCCATCTGGTTTACTACCTTAACATTCGGCCTCTGTGTGGCACAGGCCACTACATTCTTCATCAAACAAAGCGACACAATGAACCTAGAGATTATTAAAGATGTCAGCATCCCATCAGCTTCCATCTACTCTATTTCAGCAGTTGGAATGATCATTTCAGTCACCATCTATGAGAAGATCCTAGTTCCACTACTAAGGAGAGCCACTGGAACCGAAAGAGGCATCAAAATCCTCCAGAGAATCGGATTTGGAATGATATTCTCAGTTCTATCAATGAGCACCGCAGCCTTAGTGGAGAGAAAGAGGCTAAGACAAAGTAAAAGAGAAAATCCCCGCCTCTTTCTTCAAAACAACCACCCACAGCTTTTCTCCACCTTCCAACATGCCCCAGTTCACCAGCTTCATTGCCCTGATCAGAACCCAAACCCTGCAGGTTTTGTTAACAGCGAAGGAGTGCATGTGGTTGGGCCCTCCTCTGCGTCTTTTTCTTTCCCTAGTTGCGGTGACCATTCTCTCTCCTCCATTCACAACGCTAAAGACTTGGACCACCGTTTCTCCTTTGGCGCTGACGCTGTGTCTTTATCTCTGGCTCCTCACCATCGCCACCAACGGTGTGCTCCTCTGGAGCTGAATGCGAAGAGATACGACGTCGTTTCCGTTCGAGGAGGAACTCCGAAGCCGAACAACGAATTGAGAAGTTCGGTTCCGCTTGGTCCTTTCACAGGCTACGCATCGATCTTGAAGCGATCCAGCTTTTTGAGCCCTGCGCAGCAGCTTTTAGACGATTTTTGTGGCGTAGGCCGTGGAGTTTCCGATTCGGCGTCATTTGATCCTCCGTTGGAAGGAAGTGGAACCGCTGAAGATCCGATCGGTTGCAGCCATGGCAGCGAGCATTTCTGGAAGAGCTCCAGGCTCGCACCGATGCTCGACGAGGTTTACAGGAGATATAAGCTTTACTGTCAGCAGATGCATTCTGTAGTTGCATCGTTTGAAACTGTTGCTGGGCTTCAAAATGCTGCTCCATACATATCTTTTGCGTTCAAAGCCATGTCAAATCATTTCAGGTACTTGAAGAATGCAATTTTGGATCAAATTCAGTTTACAGGCAAAGCTCTTGTAGGCCATAATATTGGAAAAGACGAAACTCCAAGAGTTTGGACAGCTGACCAGGGGTTTCATAGCCAAAAAGCAGTTCAGAGCTCAATGTTTCTTCAACATCCTATTTGGCGGTCCCAAAGAGGACTTCCAGATCATGCGGTAGCTGTACTCAGGGCATGGTTGTTTGAACACTTTCTACATCCTTATCCTACTGACTTGGAGAAGCAAATTTTGGCCCAACGAACAAGCCTATCAAGAAATCAGGTTTCCAACTGGTTCATCAATGCAAGAGTTAGACTATGGAAGCCAATGGTAGAAGAAATACTCACGCTTGAGACAAAGCAAGCTCAAATGGCAGCAGAGGGAGAGGCTAACAAGCCAACTGACCCCCTTCCTTCAGCAAATCCACTGCCTCTCAGGAAACCCTTTCAAAACACACCCACCCAAAAGATGGAAGATACTCAGTCTAAACGAAGTAGAAATAAACTCTCCTATATGTTCGAACAAAGAGATGAACAAACGAACTTTCCTTACAATAATTTCTCAAGCAATTACCAAATGGGTGTTAGTGGAATTGAGAAAAGTGCAAGCAAAGGCATATCTTTAGCATTGGGTCTCCACCAAAATAACAGAATTGAGTCATCTACGAGCTTTTTTCAGCCTGGAAACAAATAG 2808 45.33 MERRERGHGEEGEGGDEKWVHDSSVDYKGRVPPRASTGVWKAASFIITIELSERLSYFGLATDLFNYFSKVLNQDSKTAAKNVNYWIGVTTVMPLLGGFLADAYTGQFYTVLLSSIIYVMGLSLLTMSQFIPRLKPCSNRKHCGHPRKVHEVVFFLGMYCVSLGTGGHKPCLESFGADQFDDNHPVERKKKMSYFNWWNFALCCGLLAGVTVIVYVDEYVGWGASYLILTSCMAFTILTFYAGKRFYRYRLPEGSPLTPMLQVLVAAIAKRNLPYPSNPDLLYEVPKSHKSKGRLLCHTNKLRFLDKAAIIEDKESLQSVEKKQSPWRLATVTKVEEMKLVLNMIPIWFTTLTFGLCVAQATTFFIKQSDTMNLEIIKDVSIPSASIYSISAVGMIISVTIYEKILVPLLRRATGTERGIKILQRIGFGMIFSVLSMSTAALVERKRLRQSKRENPRLFLQNNHPQLFSTFQHAPVHQLHCPDQNPNPAGFVNSEGVHVVGPSSASFSFPSCGDHSLSSIHNAKDLDHRFSFGADAVSLSLAPHHRHQRCAPLELNAKRYDVVSVRGGTPKPNNELRSSVPLGPFTGYASILKRSSFLSPAQQLLDDFCGVGRGVSDSASFDPPLEGSGTAEDPIGCSHGSEHFWKSSRLAPMLDEVYRRYKLYCQQMHSVVASFETVAGLQNAAPYISFAFKAMSNHFRYLKNAILDQIQFTGKALVGHNIGKDETPRVWTADQGFHSQKAVQSSMFLQHPIWRSQRGLPDHAVAVLRAWLFEHFLHPYPTDLEKQILAQRTSLSRNQVSNWFINARVRLWKPMVEEILTLETKQAQMAAEGEANKPTDPLPSANPLPLRKPFQNTPTQKMEDTQSKRSRNKLSYMFEQRDEQTNFPYNNFSSNYQMGVSGIEKSASKGISLALGLHQNNRIESSTSFFQPGNK* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3701109 3709563 - Vvi13g367 Vvi13g367 774153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g367 935 Pfam Associated with HOX 591 706 IPR006563 -
Vvi13g367 935 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 22 456 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi13g367 935 MobiDBLite consensus disorder prediction 830 872 - -
Vvi13g367 935 Pfam POT family 108 451 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi13g367 935 SMART HOX_1 754 818 IPR001356 GO:0003677
Vvi13g367 935 Pfam Homeobox KN domain 771 810 IPR008422 GO:0003677|GO:0006355
Vvi13g367 935 PANTHER PROTEIN NRT1/ PTR FAMILY 5.6 22 456 - -
Vvi13g367 935 Gene3D - 757 819 - -
Vvi13g367 935 SMART prehox3 586 708 IPR006563 -
Vvi13g367 935 Gene3D MFS general substrate transporter like domains 13 477 IPR036259 -
Vvi13g367 935 SUPERFAMILY Homeodomain-like 757 819 IPR009057 -
Vvi13g367 935 MobiDBLite consensus disorder prediction 1 21 - -
Vvi13g367 935 ProSiteProfiles 'Homeobox' domain profile. 755 814 IPR001356 GO:0003677
Vvi13g367 935 SUPERFAMILY MFS general substrate transporter 39 430 IPR036259 -
Vvi13g367 935 CDD homeodomain 754 815 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g809 Vvi13g367 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13879 PF00854 PTR2 1.60E-74 CL0015 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g367 - - vvi:100261625 999.964