Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g376 ATGGGGGACCTTCCAAAGGGTGATATTTCAGCATCAACTCTTCATACTAACATGCTACAACAAGTGTTTGGCAGTAGAGCATCGGAATATCTACTCCACAGCTACCAGAGAAGCTTCAATGGGTTTGTCGCAAAGCTGACCATGGAGGAGAAGAAGAAACTCTCTGGGATAGAGGGGGTAGTGTCTGTGTTCCCAAATGGAAAGAAGCAACTCCACACGACAAGGTCATGGGACTTCATGGGCTTCCCCCAAAAAGTTAAAAGAACAACTACTGAAAGCGATATTATTATTGGAATGCTTGACACTGGGATCTGGCCCGAGTCTGCTAGTTTCAGCGACGAAGGATTTGGTCCACAACCAAGCAAATGGAAGGGCACTTGCCAAACCTCATCCAATTTCACTTGCAACAATAAAATTATAGGAGCTAGATACTATCGAACTGATGGAAAACTAGGGCCAACAGATATTAAATCACCAAGAGATTCACTTGGCCATGGGACACACACTGCATCCACAGCAGCTGGGCGCATGGTTAGAGGGGCAAGCTTACTAGGCCTTGGCTCAGGAGCAGCTAGAGGAGGGGTTCCCTCAGCCCGCATTGCAGTTTACAAGATATGTTGGCATGATGGTTGTCCCGATGCTGATATCCTTGCAGCATTTGATGATGCAATTGCGGATGGAGTTGATATTATCTCTCTTTCTGTTGGGGGATATGATCCTTACGATTATTTTGAAGATTCAATTGCAATTGGAGCTTTCCATTCCATGAAGAATGGGATACTCACATCTAACTCTGCTGGCAACACAGGTCCAGATCCTGCCACTATAACAAATTTTTCCCCTTGGTCTCTCTCAGTTGCTGCTAGCACCATTGACAGAAAGTTTGTGACCAAAGTCAAGTTGGGAAACAACAAGGTTTATGAGGGAGTCTCTGTAAATACTTTCGAGATGGATGATATGTACCCTATTATTTATGGTGGAGATGCCCCAAATACTACAGGAGGTTATGATAGTTCTTATTCAAGGTATTGCTATGAGGACTCCTTGGACAAGTCTTTGGTAGATGGTAAAATTGTACTGTGTGATTGGTTGACTAGTGGGAAGGCAGCCATTGCTGCCGGAGCTGTAGGTACGGTAATGCAAGATGGAGGTTACTCTGATTCTGCCTACATTTACGCGTTACCGGCATCCTACTTGGACCCAAGAGATGGTGGCAAAGTTCATCACTACTTAAATTCAACTAGCAAGCCCATGGCAATTATACAAAAGAGTGTTGAGGTTAAAGATGAATTGGCCCCATTTGTAGTTTCATTTTCTTCAAGGGGCCCCAACCCTATTACAAGTGACATTCTCAAGCCAGACTTAACTGCACCTGGCGTGGACATTCTTGCAGCATGGACAGAAGCTTCATCTGTAACAGGGAAAGAAGGGGATACAAGAGTAGTTCCATACAGTATAATTTCTGGGACATCCATGTCTTGTCCACATGCGTCTGCAGCTGCTGCCTATATCAAGTCATTTCACCCAACATGGTCTCCTGCTGCTATTAAGTCTGCTCTAATGACAACTGCTGCTCGCATGAGTGTTAAAACGAACACAGACATGGAGTTTGCATATGGGGCAGGCCATATAGATCCTGTAAAGGCTGTACATCCTGGTTTGATATATGATGCTGGAGAGGCAAATTATGTCAATTTTCTATGCGGGCAAGGCTATAGCACTAAGCACTTGCGGCTTATCACAGGAGATAAAAGCACTTGTTCTGCAACCATGAATGGGACAGTTTGGGATTTAAACTACCCTTCTTTTACTATATCTACTAAGTCTGGGGTTACTGTCACTCGCATTTTCACTAGAACTGTCACTAATGTTGGATCAGCCGTCTCAACTTACAAGGCAATTTTGGCGGTTCCTTCAGGACTTAGTGTCAAAGTTGAACCAAGCGTTCTTTCATTCAAATCCCTTGGCCAGAAGAAGACCTTCACTATGACGGTTGGTACAGCAGTAGATAAAGGTGTGATATCAGGTTCTTTGGTGTGGGATGATGGGATTCACCAAGTGAGGAGCCCCATTGTGGCTTTTGTCTCTTCCTAA 2094 44.41 MGDLPKGDISASTLHTNMLQQVFGSRASEYLLHSYQRSFNGFVAKLTMEEKKKLSGIEGVVSVFPNGKKQLHTTRSWDFMGFPQKVKRTTTESDIIIGMLDTGIWPESASFSDEGFGPQPSKWKGTCQTSSNFTCNNKIIGARYYRTDGKLGPTDIKSPRDSLGHGTHTASTAAGRMVRGASLLGLGSGAARGGVPSARIAVYKICWHDGCPDADILAAFDDAIADGVDIISLSVGGYDPYDYFEDSIAIGAFHSMKNGILTSNSAGNTGPDPATITNFSPWSLSVAASTIDRKFVTKVKLGNNKVYEGVSVNTFEMDDMYPIIYGGDAPNTTGGYDSSYSRYCYEDSLDKSLVDGKIVLCDWLTSGKAAIAAGAVGTVMQDGGYSDSAYIYALPASYLDPRDGGKVHHYLNSTSKPMAIIQKSVEVKDELAPFVVSFSSRGPNPITSDILKPDLTAPGVDILAAWTEASSVTGKEGDTRVVPYSIISGTSMSCPHASAAAAYIKSFHPTWSPAAIKSALMTTAARMSVKTNTDMEFAYGAGHIDPVKAVHPGLIYDAGEANYVNFLCGQGYSTKHLRLITGDKSTCSATMNGTVWDLNYPSFTISTKSGVTVTRIFTRTVTNVGSAVSTYKAILAVPSGLSVKVEPSVLSFKSLGQKKTFTMTVGTAVDKGVISGSLVWDDGIHQVRSPIVAFVSS* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3804812 3808263 + Vvi13g376 Vvi13g376 774162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g376 697 Pfam Subtilase family 93 542 IPR000209 GO:0006508|GO:0008236
Vvi13g376 697 ProSitePatterns Serine proteases, subtilase family, serine active site. 489 499 IPR023828 -
Vvi13g376 697 Gene3D Peptidase S8/S53 domain 94 563 IPR036852 GO:0004252|GO:0006508
Vvi13g376 697 CDD PA_subtilisin_like 299 421 - -
Vvi13g376 697 ProSiteProfiles Serine proteases, subtilase domain profile. 76 550 - -
Vvi13g376 697 SUPERFAMILY Subtilisin-like 71 554 IPR036852 GO:0004252|GO:0006508
Vvi13g376 697 CDD Peptidases_S8_3 69 524 IPR034197 -
Vvi13g376 697 Gene3D - 292 428 - -
Vvi13g376 697 PANTHER PUTATIVE-RELATED 1 695 - -
Vvi13g376 697 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 72 IPR037045 -
Vvi13g376 697 Gene3D - 567 695 - -
Vvi13g376 697 PRINTS Subtilisin serine protease family (S8) signature 92 111 IPR015500 -
Vvi13g376 697 PRINTS Subtilisin serine protease family (S8) signature 161 174 IPR015500 -
Vvi13g376 697 PRINTS Subtilisin serine protease family (S8) signature 488 504 IPR015500 -
Vvi13g376 697 Pfam Fibronectin type-III domain 597 692 IPR041469 -
Vvi13g376 697 Pfam Peptidase inhibitor I9 12 71 IPR010259 -
Vvi13g376 697 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 695 IPR045051 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g376 - - vvi:100258131 1389.4