Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g418 ATGTCGACTGTAGAGAAGCGTCATGGTGATGTAGAAGAGGGAGGTAGGCGTGGGTCCGGCGGTGTCGGTGGCTCATACGGCGATGAGGAGCAGAGGTGTTCGAGGGGGCCGGGGACGGAGATTGTTGGGGTTTCGGAAAAGGGGAGGGAATCCTCTGTGTCAGAATGTTCAGTAGACGTGGATCTGGGACGTGGGGTTCCGGAGATTAAGGTGCATTTGGCGAAAGTGGAGAGGGATTGTAGGATTTGTCACCTAAGCTTGGATTCAACGAATCAGGAGTCTGGGATTCCGATTGAACTGGGTTGTTCTTGCAAGGCCGATTTGGCTGCCGCTCATAAACAGTGTGCAGAGGCGTGGTTCAAGATTAAGGGCAACAAAATCTGTGAGATATGTGGATCAGTTGCGCGAAATGTTTCTGGTGCAAATGAGGCTGAGTTGATGGAGCAGTGGGATGACACAACTGATGTTGCAACTGCAGCAGCACCTGCACGCCCAACAGAGATCCGAAACTTCTGGCAAGGCCATAGATTCCTGAATTTCCTTCTAGCTTGTATGGTCTTCGCTTTTGTCATCTCTTGGCTTTTTCACTTCAATGTATCAGCATAA 606 50.5 MSTVEKRHGDVEEGGRRGSGGVGGSYGDEEQRCSRGPGTEIVGVSEKGRESSVSECSVDVDLGRGVPEIKVHLAKVERDCRICHLSLDSTNQESGIPIELGCSCKADLAAAHKQCAEAWFKIKGNKICEICGSVARNVSGANEAELMEQWDDTTDVATAAAPARPTEIRNFWQGHRFLNFLLACMVFAFVISWLFHFNVSA* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4240677 4246840 - Vvi13g418 Vvi13g418 774204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g418 201 Pfam RING-variant domain 80 131 IPR011016 GO:0008270
Vvi13g418 201 MobiDBLite consensus disorder prediction 1 47 - -
Vvi13g418 201 MobiDBLite consensus disorder prediction 1 15 - -
Vvi13g418 201 CDD RING_CH-C4HC3_MARCH 80 132 - -
Vvi13g418 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Vvi13g418 201 ProSiteProfiles Zinc finger RING-CH-type profile. 72 138 IPR011016 GO:0008270
Vvi13g418 201 PANTHER OS01G0850200 PROTEIN 38 200 - -
Vvi13g418 201 SMART ringv_2 79 132 IPR011016 GO:0008270
Vvi13g418 201 PANTHER ZINC FINGER, RING-CH-TYPE 38 200 - -
Vvi13g418 201 SUPERFAMILY RING/U-box 77 134 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g828 Vvi13g418 ECH
Vvi6g555 Vvi13g418 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g418 - - jre:108991946 282.337