Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g422 ATGGCAAAAATTAGAGATAGAACTGAGGATTTCAAAGATGTGGTCCGCCAAACAGCACTTTCTTTGGGATATAACGAGTCCAAAATGGCATCCATACTGTCGTCTTTCATTATTCACAAACCTTTGCAAAGGACATCTTTTACCAAAGCTGCCCTAAAGACGCTTGAAAGCATCAGAACTTTGGAACAGTTCATCATGCAGCATCGGAAGGATTATGTTGATATGCACCGTACAACTGAACAGGAAAGAGATAGCATTGAACATGAAGTTACTATTTTTATTAAAGCATGTAAAGACCAAATAGATATTCTCAAGAATAGTATAAGTGGTGAAGAAGCTAACTCAAGGGGCTGGCTTGGCATTAGAGGTGATCATTCTAATGCTGATACTATTGCACACAAACATGGGGTGGTTTTGATTTTAAGTGAGAGGCTTCATTCAGTAACAGCCCAGTTTGATCAGCTAAGAGCTAGACGCTTTCAGGATGCGATTAATAGACGGATACCAAGAAAAAAAATGAACCGGGTGTCCAGTTCAAATGCTACAGAAATCCCTAAATCTATCAATTCAGAACTGAGGGAGCCTGATGAGCCTCAGCCAGAGCCTCTTAGAGTTCAACAACAACTCTTGGATGATGAAACACGTGCTCTTCAGGTAGAGTTGTCTAGCCTTCTAGATGCTGTTCAAGAAACAGAAACTCAGATGGTGGAGATGTCTGCATTGAATCACCTCATGTCCACCCATATTCTGCAACAAGCTCAACAGATAGAGCTTTTGTATGAGCAGGCAGTCGAAGCTACATCAAATGTGGAGCTTGGTAACAAAGAGCTGTCTCAAGCCATCCAGCGAAATAGCAGCAGCAGAACCTTTCTTTTGCTTTTTCTATTTGTACTTACCTTTTCAATCATCTTTCTTGATTGGTATAGTTAA 930 40.54 MAKIRDRTEDFKDVVRQTALSLGYNESKMASILSSFIIHKPLQRTSFTKAALKTLESIRTLEQFIMQHRKDYVDMHRTTEQERDSIEHEVTIFIKACKDQIDILKNSISGEEANSRGWLGIRGDHSNADTIAHKHGVVLILSERLHSVTAQFDQLRARRFQDAINRRIPRKKMNRVSSSNATEIPKSINSELREPDEPQPEPLRVQQQLLDDETRALQVELSSLLDAVQETETQMVEMSALNHLMSTHILQQAQQIELLYEQAVEATSNVELGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4299874 4306061 + Vvi13g422 Vvi13g422 774208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g422 309 SUPERFAMILY t-snare proteins 55 273 IPR010989 GO:0016020|GO:0016192
Vvi13g422 309 Gene3D - 211 306 - -
Vvi13g422 309 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
Vvi13g422 309 MobiDBLite consensus disorder prediction 173 202 - -
Vvi13g422 309 Coils Coil 94 114 - -
Vvi13g422 309 PANTHER SYNTAXIN-18 5 309 - -
Vvi13g422 309 PANTHER SYNTAXIN-18 5 309 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g422 K08492 - vvi:104881127 585.874