Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g442 ATGGACGAGGCTATGTCAGGCTTTGTTATTAAAGCTGGTGGAGGTGGCTGCGGCAATGGCGGTGGTGGAACCAAGTGTGGGCGTTGGAATCCGACTACTGAACAGGTTAAAGTTCTGACTGATCTGTTCAGGTCTGGACTCCGAACGCCGAGCACTGACCAGATTCAGAAGATCTCATCCCAGCTGAGCTTTTACGGCAAGATCGAGAGCAAAAACGTCTTTTACTGGTTCCAGAACCACAAAGCCAGGGAAAGGCAGAAGCGCCGCAGAGTCTCCGTTGATGAAAGCGACGCCGTTCGTCCAGATGACAAGATCTCATTTATAAAGCAGCCAAATCAGGCTTCGGAGCCTGAGAGAGTGATCGAGACCCTGCAACTCTTCCCTTTGAACTCCTTTCACGAATCGGAAACGGAGAAGATGAGATTGCTTACAAGCGAATGCAAGGAAACGGCGTCGTTCACATACACGATCGAGACGGAAATGGATCATCCGCCATTGGATCTGCGTTTAAGCTTCTTGTAA 522 50.0 MDEAMSGFVIKAGGGGCGNGGGGTKCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKRRRVSVDESDAVRPDDKISFIKQPNQASEPERVIETLQLFPLNSFHESETEKMRLLTSECKETASFTYTIETEMDHPPLDLRLSFL* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4546378 4547834 + Vvi13g442 Vvi13g442 774228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g442 173 CDD homeodomain 28 88 IPR001356 GO:0003677
Vvi13g442 173 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Vvi13g442 173 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Vvi13g442 173 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Vvi13g442 173 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 162 IPR044555 GO:0003700|GO:0099402
Vvi13g442 173 Gene3D - 25 92 - -
Vvi13g442 173 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 162 - -
Vvi13g442 173 SMART HOX_1 24 91 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g358 Vvi13g442 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13883 PF00046 Homeodomain 3.00E-18 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g442 - - vvi:100258187 326.635