Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g442 ATGGACGAGGCTATGTCAGGCTTTGTTATTAAAGCTGGTGGAGGTGGCTGCGGCAATGGCGGTGGTGGAACCAAGTGTGGGCGTTGGAATCCGACTACTGAACAGGTTAAAGTTCTGACTGATCTGTTCAGGTCTGGACTCCGAACGCCGAGCACTGACCAGATTCAGAAGATCTCATCCCAGCTGAGCTTTTACGGCAAGATCGAGAGCAAAAACGTCTTTTACTGGTTCCAGAACCACAAAGCCAGGGAAAGGCAGAAGCGCCGCAGAGTCTCCGTTGATGAAAGCGACGCCGTTCGTCCAGATGACAAGATCTCATTTATAAAGCAGCCAAATCAGGCTTCGGAGCCTGAGAGAGTGATCGAGACCCTGCAACTCTTCCCTTTGAACTCCTTTCACGAATCGGAAACGGAGAAGATGAGATTGCTTACAAGCGAATGCAAGGAAACGGCGTCGTTCACATACACGATCGAGACGGAAATGGATCATCCGCCATTGGATCTGCGTTTAAGCTTCTTGTAA 522 50.0 MDEAMSGFVIKAGGGGCGNGGGGTKCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKRRRVSVDESDAVRPDDKISFIKQPNQASEPERVIETLQLFPLNSFHESETEKMRLLTSECKETASFTYTIETEMDHPPLDLRLSFL* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4546378 4547834 + Vvi13g442 Vvi13g442 774228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g442 173 CDD homeodomain 28 88 IPR001356 GO:0003677
Vvi13g442 173 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Vvi13g442 173 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Vvi13g442 173 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Vvi13g442 173 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 162 IPR044555 GO:0003700|GO:0099402
Vvi13g442 173 Gene3D - 25 92 - -
Vvi13g442 173 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 162 - -
Vvi13g442 173 SMART HOX_1 24 91 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g442 - - - vvi:100258187 326.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g358 Vvi13g442 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g442 Blo04g00142 . . . . . . . . . . . . . Sed11g2169 Cpe13g01073 . Bhi04g02335 Tan11g0257 Cmetu03g1117 . Hepe02g3328 . Lcy10g2207 . . . . . . . Cone1ag1228 Cone5ag0215 . . Lsi03g00319 Csa06g00167 . . . . . . . . . . . Cmo04g03039 Cmo15g00135 Cma04g02915 Cma15g00124 Car04g02803 Car15g00135 . Cpe01g02525 . . . . . . . Cla11g00606 . . . . . . . . Chy03g00173 Cme03g00234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi8g89 . 14 232 Wox Gene Family AT3G03660 55.9 8.3e-58 221.1
Vvi8g89 . 14 232 Wox Gene Family AT5G17810 51.0 3.5e-55 212.2
Vvi4g1199 ECH 1 240 Wox Gene Family AT4G35550 56.4 6.1e-68 254.6
Vvi18g82 ECH 1 244 Wox Gene Family AT4G35550 54.3 1.4e-67 253.4
Vvi4g1200 . 1 237 Wox Gene Family AT4G35550 55.9 6.8e-67 251.1
Vvi18g735 . 4 143 Wox Gene Family AT1G46480 69.0 1.5e-52 203.0
Vvi13g442 ECH 19 174 Wox Gene Family AT3G11260 57.4 4.6e-43 171.4
Vvi18g735 . 4 143 Wox Gene Family AT1G46480 69.0 1.5e-52 203.0
Vvi13g442 ECH 19 174 Wox Gene Family AT3G11260 57.4 4.6e-43 171.4
Vvi8g89 . 14 232 Wox Gene Family AT3G03660 55.9 8.3e-58 221.1
Vvi8g89 . 14 232 Wox Gene Family AT5G17810 51.0 3.5e-55 212.2
Vvi4g1199 ECH 1 240 Wox Gene Family AT4G35550 56.4 6.1e-68 254.6
Vvi18g82 ECH 1 244 Wox Gene Family AT4G35550 54.3 1.4e-67 253.4
Vvi4g1200 . 1 237 Wox Gene Family AT4G35550 55.9 6.8e-67 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008920 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13883 PF00046 Homeodomain 3.00E-18 CL0123 Vvi TF