Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g443 ATGGCGTCGAGCGAGAGTGCAGTGTTGCAGTTCTTCCCATCCTCAACGAGCTTGTCAGCGAAGGTTCACCCTCTGGTGATCTTCAATATCTGCGATTGCTATGTTCGACGCCCTGACCAAGCCGAGCGAGTCATCGGAACCCTCCTCGGTTCGATCTCTCCCGATGGCACCGTAGATATTCGCAATTCTTACGCTGTTCCTCACAATGAGTCCTCCGATCAGGTTGCATTGGATATCGATTACCATCATAATATGTTATTATCCCACCAGAAGGTGAATCCAAAGGAAGTCATTGTCGGATGGTATTCAACTGGTTTAGGAGTCACTGGCGGTAGTGCATTAATCCATGAATTCTACTCTAGAGAGGTTCAAAACCCCATTCATTTGACTGTTGATACAACATTCAGGAATGGGGAGGCTACCATAAAGGCTTTTGTTTCTGTTAGTTTGTCCCTTGGAGAACGACAACTTGCTGCTCAATTTCAAGAAATTCCTCTGGATCTACGTATGGTTGAAGCAGAGCGAGTTGGATTTGACATCCTGAAGACAACAATGGTTGAAAAACTCCCAAGCGATTTGGAAGGAATGGAAGCCTCAATGGAACGGCTACTAGCTCTGATTGATGATGTGTACAAATACGTTGACAGTGTAGTGGAAGGACAGGTTGTGCCAGATAATGACATTGGGAGATTTATAGCAGATACAGTGGCTTCTATTCCCAAAATTTCACCTCCAGCTTTTGATAGGCTGGTGAATGACAGCCTTCAGGACCACTTACTCCTACTGTACTTGTCAAGCATCACAAGGACACAGCTGAGCTTAGCGGAAAAGTTGAACACAGCTGCTCAAATCCCGTAA 858 45.57 MASSESAVLQFFPSSTSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSISPDGTVDIRNSYAVPHNESSDQVALDIDYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVQNPIHLTVDTTFRNGEATIKAFVSVSLSLGERQLAAQFQEIPLDLRMVEAERVGFDILKTTMVEKLPSDLEGMEASMERLLALIDDVYKYVDSVVEGQVVPDNDIGRFIADTVASIPKISPPAFDRLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIP* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4550133 4557877 - Vvi13g443 Vvi13g443 774229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g443 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Vvi13g443 285 Gene3D Cytidine Deaminase, domain 2 10 186 - -
Vvi13g443 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi13g443 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 9 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi13g443 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 9 283 - -
Vvi13g443 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi13g443 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi13g443 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi13g443 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g868 Vvi13g443 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g443 K03249 - vvi:100249540 534.258