Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g447 ATGCTCCGGATCGTCTTCGACAGTCGGCGAGGACCGAGGTCCCGGAGCTCGCAGTACCGTGGCGTTACGTTTTACCGGCGAACTGGTCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTGTATTTGGGTGGATTTGACACGGCTCATGCTGCAGCAAGAGCATATGACCGGGCCGCAATTAAGTTCCGGGGAGTGGATGCTGATATCAATTTCAGCATAAGTGATTATGAAGAAGACATGAAACAAATGAAGAACCTGAATAAAGAGGAATTCGTGCACATACTTCGTCGTCAAAGCAATGGATTCTCACGAGGGAGCTCAAAATATAGAGGTGTGACCCTTCATAAATGTGGAAGATGGGAAGCTCGAATGGGGCAATTCCTTGGGAAGAAGTATATTTATCTTGGGTTATTCGACAGCGAAATAGAAGCCGCAAGGGCATATGACAAAGCTGCTATCCGATACAATGGAAGGGAAGCGGTCACCAACTTTGTGCCAAGTACCTATGGAGAAGGGGCAATCTTAGAGGCCAATGACAGAAGCAGTGGGCACAATCTTGATTTGAACCTTGGGCTTTCTTTCCCTCCCGATGGTCCTAGGGGAAATGACACAGTTGGGAGGAGATCCATGGTTGAGGGCTCCACTTACACACTAGTTGGTGGACAACCCCGCCATAGTCTAACCACAGTATCCAAGCACCTTCCCATGATATCCGGCATATGCACTAGTTTCTTACCAATTCACGAGGAAACAGCCCTGGAGAAAAGGTTGGACGGGGTTTCTTCACCAAGATTCTCAAACTGGGCAAGGCAAGTGTATGGCCATGGTGTCAATATCCCAATCCCACTGTTGTCTACTGCAGCATCATCAGGATTCCCTTCTTGCTCCACCATTGGTCCCTCTGCAACTCTTCCACTATTAAATCCCAGGAACATTAATCCTGCCCTGCAGCCTCCTCCACAAATCTCCCCACCAACTACATCCACCACCAACAGTACAAGTTGCTTCTACAATTTTGGGAGCTCAAATCAACAGATGCAGTTTTGA 1053 48.24 MLRIVFDSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFSISDYEEDMKQMKNLNKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIRYNGREAVTNFVPSTYGEGAILEANDRSSGHNLDLNLGLSFPPDGPRGNDTVGRRSMVEGSTYTLVGGQPRHSLTTVSKHLPMISGICTSFLPIHEETALEKRLDGVSSPRFSNWARQVYGHGVNIPIPLLSTAASSGFPSCSTIGPSATLPLLNPRNINPALQPPPQISPPTTSTTNSTSCFYNFGSSNQQMQF* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4719897 4724111 + Vvi13g447 Vvi13g447 774233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g447 350 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 Pfam AP2 domain 109 159 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 PRINTS Ethylene responsive element binding protein signature 149 169 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7-LIKE 5 317 - -
Vvi13g447 350 SUPERFAMILY DNA-binding domain 109 167 IPR016177 GO:0003677
Vvi13g447 350 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Vvi13g447 350 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Vvi13g447 350 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 317 - -
Vvi13g447 350 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Vvi13g447 350 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g340 Vvi13g447 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13885 PF00847 AP2 2.80E-10 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g447 K09284 - vvi:100263240 667.151