Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g452 ATGGCAGATGGTCCGGCGAGTCCCCCCGGAGGCAGCCACGAAAGCGGCGGGGACCAGAGCCCCCGCCACAACGTTCGTGAGCAGGACCGGTACCTTCCGATCGCCAACATCAGCCGCATCATGAAGAAGGCGTTGCCGGCTAATGGTAAGATCGCCAAGGATGCGAAGGACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGGGTGATACCAGGGGATCTGCTAGAGGTGGAGATGGATCTGCTAGAAGGGATGCAATAGGAAGTCAACCTGGTCCAAATGCACAGTTTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAG 531 52.35 MADGPASPPGGSHESGGDQSPRHNVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLQRYREGDTRGSARGGDGSARRDAIGSQPGPNAQFAHQGSFTQAMNYMNSQAQGQHLIVSPVQSSE* 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4752810 4757492 + Vvi13g452 Vvi13g452 774238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g452 176 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi13g452 176 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vvi13g452 176 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vvi13g452 176 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vvi13g452 176 MobiDBLite consensus disorder prediction 118 149 - -
Vvi13g452 176 Gene3D Histone, subunit A 19 166 IPR009072 GO:0046982
Vvi13g452 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vvi13g452 176 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 161 - -
Vvi13g452 176 SUPERFAMILY Histone-fold 28 121 IPR009072 GO:0046982
Vvi13g452 176 MobiDBLite consensus disorder prediction 1 29 - -
Vvi13g452 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g332 Vvi13g452 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13886 PF00808 CBFD_NFYB_HMF 6.00E-28 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g452 K08065 - vvi:100259924 333.183