Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g460 ATGGAAAGCGCTGAGAACAACAAAGCACCGGGGACTACTGTTTCAACTCCTCTTCCGTTTTCTCCAACTTCTTCTTCTAATTCAGGTCTCCCCCGGTCTCCTCCTGCCCTTGTCGTTCTCAGCCCTTGTGCTGCCTGCAAGATCCTCCGCCGGCGATGCGCCGATAAATGTGTTTTGGCTCCATACTTTCCTCCCACCGAGCCCCTCAAATTCACCATTGCCCACAGAGTCTTCGGAGCTAGCAACATTATCAAGCTCTTGCAGGATCTCCCGGAATCCCAGAGAGCGGATGCTGTGAGCAGCATGGTGTATGAAGCAAATGCGAGAATTCGGGACCCCGTGTATGGATGTGCTGGCGCAATTTGTCACCTTCAGAAACAAGTGAGTGAGCTGCAGGCACAATTGGCTAAGGCCCAAGCGGATGTCATCAACATGCAATGCCAGCAAGACAACTTAGTGGCCATACTTTGCATGGACTTTCAGCAGCAGCAGCAGCAGCCACAATATCAGCAGCAACAACAACAACCATTTGAGTTCAATGGGAGCTTCTTCCTTGAGGATGGCAATCTTGTCATGGAGCCTCTGTGGACATGA 594 51.35 MESAENNKAPGTTVSTPLPFSPTSSSNSGLPRSPPALVVLSPCAACKILRRRCADKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSELQAQLAKAQADVINMQCQQDNLVAILCMDFQQQQQQPQYQQQQQQPFEFNGSFFLEDGNLVMEPLWT* 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4853461 4854800 + Vvi13g460 Vvi13g460 774246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g460 197 MobiDBLite consensus disorder prediction 1 32 - -
Vvi13g460 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 196 - -
Vvi13g460 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 23 196 - -
Vvi13g460 197 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vvi13g460 197 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vvi13g460 197 Coils Coil 128 148 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13887 PF03195 LOB 2.80E-41 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g460 - - vvi:100259896 345.125