Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g461 ATGATTTTCATACATTATACATTTATGGGGCGAAACGGGAGAGATAATGGCAAAAGGGAAAGCGAAATTGATGAGATGGAATACACCGACCCAACCACAACTGGTTCAACCATTGATCCCTCCTCTTCTTCAAGGCTTGCTGCTTCTCTTCCAACAGCTGTTAAGGGTCCATGCGCTGCCTGCAAGATCCTTCGGCGTCGGTGCACCGACAAAGGCATGTTAGCTCCATATTTTCCACCCACTGAAACCCTCAAATTCATCATTGCCCATAAAGTTTTTGGAGCTAGCAACATCGTCAAGTCCTTGCAGGAACTTCCGGAGTCGATGAGAGCAGATGCAGTGAGCAGCATGGTTTATGAAGCAAAAGCTAGAATTCGTGATCCGGTCTATGGGTGTGCTGGTGCAATTAATCAGCTCCAAAAAGAACTGCGAGATCTCCAAACAGAATTGGCTGCCACACAAGCCGATCTCGCTATCATTCGATGCCAGCAACAGCAACTACAACTAAATGACAGTATGAGCTTCCCCGAACAAAGCAATTTAGGCTCACCTTGGGAATCTTACTGGAATTAG 573 46.25 MIFIHYTFMGRNGRDNGKRESEIDEMEYTDPTTTGSTIDPSSSSRLAASLPTAVKGPCAACKILRRRCTDKGMLAPYFPPTETLKFIIAHKVFGASNIVKSLQELPESMRADAVSSMVYEAKARIRDPVYGCAGAINQLQKELRDLQTELAATQADLAIIRCQQQQLQLNDSMSFPEQSNLGSPWESYWN* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4881854 4885208 + Vvi13g461 Vvi13g461 774247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g461 190 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Vvi13g461 190 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Vvi13g461 190 Coils Coil 136 163 - -
Vvi13g461 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 175 - -
Vvi13g461 190 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 39 175 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g318 Vvi13g461 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13888 PF03195 LOB 1.00E-36 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g461 - - vvi:100242788 329.717