Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g462 | ATGGAATACACCGACCCAACTACAACTGGGTCAACCATTCCCTCTTCTTCTTCAAGCCTTGCTCCTTCTCTTCCAACAGCTGTTCAACGTCCATGTGCTGCCTGCAAGATCCTTCGGCGTCGGTGCACCGACAGATGTGTGTTAGCTCCATATTTTCCACCCACTGAACCCTTCAATTTCATCATTGCTCATAGGGTTTTTGGAGCTAGCAACATCATCAAGTCCGTGCAGGACCTCCCGGAGTCGAGAAGAGCAGATGCAGTGAGCAGCATGATTTATGAAGCAAATGTTAGAATGTGTGATCCGGTCTATGGGTGTGCTGGTGCAATTAGTCAGCTCCATAAACAACTGTGTGATCTCCAAACAGAATTGGCTGCCACACAAGCCGAGCTCGCTATCGTGCAATGCCAGCAACAGCAACTAAATGAGAGTGGTCCCTGTGCTGCCTGCAAAATCCTTCGTCGTCGATGCACTGAGAGATGTGTGTTAGCTCCATATTTTCCACCGACTGAACCACTCAAATTTGTCATTGCCCATAAGGTCTTTGGAGCTAGCAACATCGTCAAGGCCTTGCAGGAACTTCCCGAGTCCAAGAGAGCGGATGCAGTAAGCAGCATGGTATATGAAGCCTATGCGAGAAATCGTGATCCAGTCTATGGTTGTGCTGGTGCAATTAGTCACCTTCAGAAACAACTTAATGATCTCCAAGCAGAATTGGCTATGACACAAGCGGCGCTCCTTCTCATACAATGCCAACAACATGAACAAAATCATGAGAATACAGCCATCTTTGATCAGGACAAATATTTCAGCTCCGTCTTGGAGCCTTCTTGGCAATGA | 840 | 47.5 | MEYTDPTTTGSTIPSSSSSLAPSLPTAVQRPCAACKILRRRCTDRCVLAPYFPPTEPFNFIIAHRVFGASNIIKSVQDLPESRRADAVSSMIYEANVRMCDPVYGCAGAISQLHKQLCDLQTELAATQAELAIVQCQQQQLNESGPCAACKILRRRCTERCVLAPYFPPTEPLKFVIAHKVFGASNIVKALQELPESKRADAVSSMVYEAYARNRDPVYGCAGAISHLQKQLNDLQAELAMTQAALLLIQCQQHEQNHENTAIFDQDKYFSSVLEPSWQ* | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4909946 | 4938957 | + | Vvi13g462 | Vvi13g462 | 774248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g462 | 279 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Vvi13g462 | 279 | ProSiteProfiles | LOB domain profile. | 145 | 246 | IPR004883 | - | |
Vvi13g462 | 279 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 145 | 256 | - | - | |
Vvi13g462 | 279 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 15 | 141 | - | - | |
Vvi13g462 | 279 | PANTHER | DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED | 145 | 256 | - | - | |
Vvi13g462 | 279 | PANTHER | DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED | 15 | 141 | - | - | |
Vvi13g462 | 279 | ProSiteProfiles | LOB domain profile. | 30 | 131 | IPR004883 | - | |
Vvi13g462 | 279 | Coils | Coil | 225 | 245 | - | - | |
Vvi13g462 | 279 | Pfam | Lateral organ boundaries (LOB) domain | 146 | 243 | IPR004883 | - | |
Vvi13g462 | 279 | Pfam | Lateral organ boundaries (LOB) domain | 31 | 128 | IPR004883 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13889 | PF03195 | LOB | 1.50E-39 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g462 | - | - | vvi:100246173 | 278.1 |