Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g462 ATGGAATACACCGACCCAACTACAACTGGGTCAACCATTCCCTCTTCTTCTTCAAGCCTTGCTCCTTCTCTTCCAACAGCTGTTCAACGTCCATGTGCTGCCTGCAAGATCCTTCGGCGTCGGTGCACCGACAGATGTGTGTTAGCTCCATATTTTCCACCCACTGAACCCTTCAATTTCATCATTGCTCATAGGGTTTTTGGAGCTAGCAACATCATCAAGTCCGTGCAGGACCTCCCGGAGTCGAGAAGAGCAGATGCAGTGAGCAGCATGATTTATGAAGCAAATGTTAGAATGTGTGATCCGGTCTATGGGTGTGCTGGTGCAATTAGTCAGCTCCATAAACAACTGTGTGATCTCCAAACAGAATTGGCTGCCACACAAGCCGAGCTCGCTATCGTGCAATGCCAGCAACAGCAACTAAATGAGAGTGGTCCCTGTGCTGCCTGCAAAATCCTTCGTCGTCGATGCACTGAGAGATGTGTGTTAGCTCCATATTTTCCACCGACTGAACCACTCAAATTTGTCATTGCCCATAAGGTCTTTGGAGCTAGCAACATCGTCAAGGCCTTGCAGGAACTTCCCGAGTCCAAGAGAGCGGATGCAGTAAGCAGCATGGTATATGAAGCCTATGCGAGAAATCGTGATCCAGTCTATGGTTGTGCTGGTGCAATTAGTCACCTTCAGAAACAACTTAATGATCTCCAAGCAGAATTGGCTATGACACAAGCGGCGCTCCTTCTCATACAATGCCAACAACATGAACAAAATCATGAGAATACAGCCATCTTTGATCAGGACAAATATTTCAGCTCCGTCTTGGAGCCTTCTTGGCAATGA 840 47.5 MEYTDPTTTGSTIPSSSSSLAPSLPTAVQRPCAACKILRRRCTDRCVLAPYFPPTEPFNFIIAHRVFGASNIIKSVQDLPESRRADAVSSMIYEANVRMCDPVYGCAGAISQLHKQLCDLQTELAATQAELAIVQCQQQQLNESGPCAACKILRRRCTERCVLAPYFPPTEPLKFVIAHKVFGASNIVKALQELPESKRADAVSSMVYEAYARNRDPVYGCAGAISHLQKQLNDLQAELAMTQAALLLIQCQQHEQNHENTAIFDQDKYFSSVLEPSWQ* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4909946 4938957 + Vvi13g462 Vvi13g462 774248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g462 279 MobiDBLite consensus disorder prediction 1 24 - -
Vvi13g462 279 ProSiteProfiles LOB domain profile. 145 246 IPR004883 -
Vvi13g462 279 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 145 256 - -
Vvi13g462 279 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 141 - -
Vvi13g462 279 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 145 256 - -
Vvi13g462 279 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 15 141 - -
Vvi13g462 279 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Vvi13g462 279 Coils Coil 225 245 - -
Vvi13g462 279 Pfam Lateral organ boundaries (LOB) domain 146 243 IPR004883 -
Vvi13g462 279 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g316 Vvi13g462 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13889 PF03195 LOB 1.50E-39 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g462 - - vvi:100246173 278.1