Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g463 | ATGGAATACACTAACAAAACTAGAAGATCACTTAGAGTTTCCACTCCTTTCTCCTTTTCATCATCATCTTACTCTCCTTCTTTGATGCCTTCTCCTTCTCTTCCAACTGTTGTTCAAGGTCCTTGCGCCGCCTGCAAAGTCCTCCGCCGTCGATGCACAGACACATGCTCTTTAGCTCCATATTTTCCACCAAGTGAGCAGCTCAAATTCGTCATTGCCCATAAAGTCTTTGGAGCTAGCAACATTGTCAAGGCGTTGCAGGAACTTCCTGAGTCCAAAAGAGCAGATGCTGTGAGCAGCATGGTATATGAAGCAAATGTGAGAATTCATGATCCAGTTTATGGTTGTGCTGGTGCAATCAGTAAGCTTCAGAAACAACTTAATGATCTCCAAGCAGAATTGGCCGTGACCCAAGCTGAGCTACTTATCATGCAATGCCAGCAGCAGCAACAAAATGACATCGCAAGCTTCTACGACAGAGATTTAGGTTCGGATTAG | 498 | 44.58 | MEYTNKTRRSLRVSTPFSFSSSSYSPSLMPSPSLPTVVQGPCAACKVLRRRCTDTCSLAPYFPPSEQLKFVIAHKVFGASNIVKALQELPESKRADAVSSMVYEANVRIHDPVYGCAGAISKLQKQLNDLQAELAVTQAELLIMQCQQQQQNDIASFYDRDLGSD* | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 4961088 | 4962007 | - | Vvi13g463 | Vvi13g463 | 774249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g463 | 165 | Coils | Coil | 120 | 147 | - | - | |
| Vvi13g463 | 165 | Pfam | Lateral organ boundaries (LOB) domain | 41 | 138 | IPR004883 | - | |
| Vvi13g463 | 165 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 26 | 152 | - | - | |
| Vvi13g463 | 165 | PANTHER | DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED | 26 | 152 | - | - | |
| Vvi13g463 | 165 | ProSiteProfiles | LOB domain profile. | 40 | 141 | IPR004883 | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 13890 | PF03195 | LOB | 6.10E-40 | No_clan | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g463 | - | - | vvi:100251310 | 290.041 |