Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g465 ATGGAATACACTGAGAAAACTACAAAACCACTTAAAGTTTTCAATAGTATTCATTTATTCTCCTCCTCCTCCTCCTCATCATCATCATCTTCTTCTTCTTCTTCAAGGTCGTCTTCTTTTCCAGCTGCCAGCCAAGGTCCTTGTGCTGCCTGTAAAGTCCTTCGTCGCCGATGCACCGAGAGTTGTATTTTAGCCCCATATTTTCCATCAACTAAACCATTCCAGTTCATCACTGCTCATAAAGTCTTTGGAGCCAGCAACATAATCAAGTGGTTGAAGGAAGTTCCAGAGACCAATAGAGCAGATGCTGTGAGCAGCATGGTCTATGAAGCAAATGCCAGAATTCTTGATCCAGTCTACGGGTGTGCTGGTGCGATTAGCAAGCTTCAGAAACAACTTGAAGAAGTGCAAGCAGAATTAGCCATGACGCAAGCTGAACTCCTTTTCATGCGATGCCAACAACAGCAACTAGATGATAATGCAAAGTTCCATAGAAATTCAGGCTCGGCCAATTGGGAATGA 522 43.49 MEYTEKTTKPLKVFNSIHLFSSSSSSSSSSSSSSSRSSSFPAASQGPCAACKVLRRRCTESCILAPYFPSTKPFQFITAHKVFGASNIIKWLKEVPETNRADAVSSMVYEANARILDPVYGCAGAISKLQKQLEEVQAELAMTQAELLFMRCQQQQLDDNAKFHRNSGSANWE* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4972455 4973665 - Vvi13g465 Vvi13g465 774251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g465 173 MobiDBLite consensus disorder prediction 21 44 - -
Vvi13g465 173 MobiDBLite consensus disorder prediction 21 45 - -
Vvi13g465 173 Pfam Lateral organ boundaries (LOB) domain 47 144 IPR004883 -
Vvi13g465 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 158 - -
Vvi13g465 173 ProSiteProfiles LOB domain profile. 46 147 IPR004883 -
Vvi13g465 173 Coils Coil 126 153 - -
Vvi13g465 173 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 30 158 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13891 PF03195 LOB 2.10E-40 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g465 - - vvi:100256462 322.783