Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g467 ATGTTTTCGCCTCCTTCAACTGCCTTTCAAGGTCCTTGTGCTGCCTGCAGGTTCCTCAGACGTCGATGCAATGAGAGTTGTATCCTAGCTCCATATTTTCCACCAAATGAACCACTCAAATTCATCAATGCCCATAAAGTCTTTGGAGCTAGCAACATCGTCAAGGCCTTGCAGGAACTTCCCCAGCCCAAGAGAGTAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCGAGAATTCGTGATCCAGTCTATGGTTGTGCAGGTACAATTAGCCAGCTTCACAAACAGGTTAACGACCTGAAAGCAGAATTGGCCATGGCTCAGGCTGAGCTCTTTATCATGCAATGCCAGCAACAGCAACAAAATGCTAATGCAAGCTTCTTCCTGGACAGATATTTAGTCTCAGATTATTGCTAA 420 45.71 MFSPPSTAFQGPCAACRFLRRRCNESCILAPYFPPNEPLKFINAHKVFGASNIVKALQELPQPKRVDAVSSMVYEANARIRDPVYGCAGTISQLHKQVNDLKAELAMAQAELFIMQCQQQQQNANASFFLDRYLVSDYC* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5001202 5002266 - Vvi13g467 Vvi13g467 774253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g467 139 Coils Coil 91 111 - -
Vvi13g467 139 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 123 - -
Vvi13g467 139 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Vvi13g467 139 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 7 123 - -
Vvi13g467 139 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g318 Vvi13g467 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13893 PF03195 LOB 9.70E-41 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g467 - - vvi:100249585 276.174