Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g468 ATGTTAGCTCCATATTTTCCATCCAGTGAACCCCTCAATTTCATCATCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCCGAGTCAAAGAGAGCAGATGCAGCAAGAAGCATGGTTTATGAAGCAAATATGAGAATTCGTGATCCAGTCTATGGTTGTGCTGGTGCAATTAGTCATCTTCAGAATCAAGTTAATGGTCTGAAAGCAGAATTGGCCATGACACAAGCCGAGCTACTTATCATGCAATCTCAGCAACAGCAACAAACCCACAGTGCAAGCTCACCTCTTTCTCTGAGGATGGAGGAATACAATTACAAAACTTCTAATACTCCTTTCTCTTCTTCTTCTTCTTCAAGGGTCTCTCCTCTTCTAAGTGGGAGTGCTGTTCAAGGTCCTTGTGGCGCCTGCAAGGTTCTTCGTCGCCGATGCACTAAGAGTTGTCTTCTTGCTCCATATTTTCCACCAACCGAACCAATGAAGTTCATTAATGCCCATAAAATCTATGGAGCTAGCAACATCGTCAAGTGCTTGCAGGAACTTCCCGAGTCCAAGAGAGCAGATGCTGTAAGCAGCATGGTTTACGAAGCAAATGCAAGAATTCGTGATCCAGTTTACGGTTGTGCTGGTGCAATTAGTCATCTTCAGAAACGGCTTAATGATGTGCAAGCAGAATTGGCAATGACACAAGCTGAGATACTTATCATGCAGAGCCAGCAGCAGCAACAACAACAACAACAAAATGATAATGCAATTCAAGGGCTTCATACTAAAAGTGATTTCCCCGACATAGCTATACCTCTCCTTGTCATTGAGGAAACCGCCAGCAAAAAAGTTGCCATAGCTGGATTATGCTTAATTGACCTCACCGACCTTTAA 897 43.59 MLAPYFPSSEPLNFIIAHRVFGASNIIKFLQELPESKRADAARSMVYEANMRIRDPVYGCAGAISHLQNQVNGLKAELAMTQAELLIMQSQQQQQTHSASSPLSLRMEEYNYKTSNTPFSSSSSSRVSPLLSGSAVQGPCGACKVLRRRCTKSCLLAPYFPPTEPMKFINAHKIYGASNIVKCLQELPESKRADAVSSMVYEANARIRDPVYGCAGAISHLQKRLNDVQAELAMTQAEILIMQSQQQQQQQQQNDNAIQGLHTKSDFPDIAIPLLVIEETASKKVAIAGLCLIDLTDL* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5028968 5045341 - Vvi13g468 Vvi13g468 774254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g468 298 Coils Coil 218 238 - -
Vvi13g468 298 Pfam Lateral organ boundaries (LOB) domain 1 82 IPR004883 -
Vvi13g468 298 Pfam Lateral organ boundaries (LOB) domain 139 236 IPR004883 -
Vvi13g468 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 102 - -
Vvi13g468 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 125 254 - -
Vvi13g468 298 Coils Coil 64 84 - -
Vvi13g468 298 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 125 254 - -
Vvi13g468 298 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 1 102 - -
Vvi13g468 298 ProSiteProfiles LOB domain profile. 138 239 IPR004883 -
Vvi13g468 298 ProSiteProfiles LOB domain profile. 1 85 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g316 Vvi13g468 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13894 PF03195 LOB 5.20E-39 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g468 - - vvi:100259810 278.87