Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g474 ATGGGGAAGAAAGGGAATTGGTTTTCTGCAGTAAAGAAAGCTCTAAGCCCTGAACCCAAGGAGAAGAAAGATAAGACAACCCCTAAATCGAAGAAAAAATGGTTTGGGAAACACAAGAACCTGGATCCGGTTTCTTCATCCACAGAAAATGCAATGCCTCTACCTGCCCCTGCACCTCCTATAGAGGATGTGAAATTAACAGAAGCTGAGAATGAACAGAGCAAGCATGCTTACTCGGTGGCGCTTGCCACTGCTGTGGCTGCAGAGGCAGCTGTTGCAGCAGCACATGCTGCTGCAGAGGTTGTTCGACTCACGACCGTGACCCGTTTCTCAGGCAAATCAAAAGAGGAAGTAGCGGCTATCAAAATTCAAACAGCTTTTCGTGGTTACTTGGCAAGGAGGGCTTTGCGGGCTCTGAGGGGCTTAGTGAGGTTGAAATCATTGATCCAAGGACAATCTGTTAAACGCCAAGCAACAACCACCTTACGGTGCATGCAGACTCTTGCTCGTGTGCAGTCTCAGATTCGTGCAAGGAGGATTAGAATGTCAGAGGAGAACTTGGCTCTCCAGCGGCAACTCCAATTGAAGCGCGACAAAGAGCTTGAGAAACTGAGAGCTTCTATGGGAGATGATTGGGATGATAGTGTACAATCTAAGGAGCAAATTGAAGCAAACTTACAGAGCAAGCAAGAGGCTGCAGTGAGAAGAGAAAGGGCATTAGCTTATGCATTTTCGCATCAGCAAACGTGGAAGAACTCTTCAAAACCTGCAAACCCAACATTTATGGATCCAAACAATCCTCACTGGGGGTGGAGTTGGTTAGAGCGATGGATGGCAGCCCGGCCATGGGAGAGCCGCAGTGCAATGGAAAAGGAACTTAACACTGATCATGCCTCATTGAAAAGCACAACAAGCCGTGCCTTCTCTATTGGAGAAATCAGCAAAGCTTATGCACGTCGGGACCTCAACCTTGATAAGAAACCTTCCCCAACTGCCCAAAAACCAATGGTTGGGGTGCAGATGATGACTCGAGGAGCATGCTCAGCATCCAGTCTGAGCGGTACAGGAGGCATAGCATTGCAGGGTCATTAG 1092 48.26 MGKKGNWFSAVKKALSPEPKEKKDKTTPKSKKKWFGKHKNLDPVSSSTENAMPLPAPAPPIEDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAHAAAEVVRLTTVTRFSGKSKEEVAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENLALQRQLQLKRDKELEKLRASMGDDWDDSVQSKEQIEANLQSKQEAAVRRERALAYAFSHQQTWKNSSKPANPTFMDPNNPHWGWSWLERWMAARPWESRSAMEKELNTDHASLKSTTSRAFSIGEISKAYARRDLNLDKKPSPTAQKPMVGVQMMTRGACSASSLSGTGGIALQGH* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5123655 5129109 - Vvi13g474 Vvi13g474 774260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g474 363 MobiDBLite consensus disorder prediction 1 56 - -
Vvi13g474 363 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Vvi13g474 363 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vvi13g474 363 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 348 - -
Vvi13g474 363 PANTHER IQ-DOMAIN 5-RELATED 1 348 - -
Vvi13g474 363 Coils Coil 219 239 - -
Vvi13g474 363 SMART iq_5 115 137 IPR000048 GO:0005515
Vvi13g474 363 Gene3D iswi atpase 113 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g606 Vvi13g474 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g474 - - vvi:100256490 584.719