Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g476 ATGGACGTGATCAATTTTCTGATCTATAGAATTTCCTCAGGTGCGACTAGGGTTCTAGCAACTCCGTTGTTCTCTCTGCGCAGTCTCTTGCTTTCAAGGTCAGTTCCTAGCAAAGAATTCATAATGGGTAAGGAGAAGGTCCACATTAACATTGTGGTCATTGGCCATGTTGATTCTGGTAAGTCAACCACAACTGGCCATCTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTCATTGAGCGGTTTGAGAAGGAGGCTGCTGAGATGAATAAGCGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGGGAGCCTGGCATTTCCAAGGATGGGCAGACTCGTGAGCATGCTCTCCTTGCTTTCACCCTTGGTGTCAGGCAGATGATCTGCTGCTGCAACAAGATGGATGCTACAACCCCTAAGTACTCAAAGGCGAGATATGATGAAATTGTTAAGGAAACAACATGA 483 46.79 MDVINFLIYRISSGATRVLATPLFSLRSLLLSRSVPSKEFIMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAEREPGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKETT* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5153150 5166524 + Vvi13g476 Vvi13g476 774262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g476 160 Gene3D - 37 113 IPR027417 -
Vvi13g476 160 PANTHER TRANSLATION FACTOR 42 112 - -
Vvi13g476 160 PANTHER TRANSLATION FACTOR 109 158 - -
Vvi13g476 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 158 IPR027417 -
Vvi13g476 160 Pfam Elongation factor Tu GTP binding domain 47 113 IPR000795 GO:0003924|GO:0005525
Vvi13g476 160 Gene3D - 114 160 IPR027417 -
Vvi13g476 160 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 42 112 - -
Vvi13g476 160 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 109 158 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g604 Vvi13g476 ECH
Vvi6g306 Vvi13g476 ECH
Vvi6g303 Vvi13g476 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g476 K03231 - phu:Phum_PHUM075480 182.185