Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g497 ATGTCTGCCGACTGGATGCCCGGCCAGCCCCGCCCACCCTACCTTGATGGCTCCGCCCCTGGTGACTTTGGATTTGACCCACTTCGGCTTGGTGAAGTCCCAGAGAATCTGGAGAGATATAAGGAATCCGAACTTATCCACTGCAGATGGGCTATGCTCGCTGTTCCGGGAGTCCTAGTGCCAGAAGCCTTGGGCTTAGGCAACTGGGTACAGGCTCAAGAGTGGGCAGCAATTCCAGGAGGCCAAGCCACCTACTTGGGCAACCCAGTCCCATGGGGCAACCTCCCGACAATTTTGGCGATCGAATTCCTGGCCATTGCCTTTGTTGAGCACCAACGCAGCATGGAGAAGGACACCGAGAAGAAGAAGTACCCTGGTGGCGCTTTCGACCCATTAGGCTACTCCAAGGACCCTGTCAAGTTCGAGGAATACAAAGTGAAAGAGATCAAAAATGGCCGCCTTGCAATTTTGGCGTTCGTCGGGTTCTGCGTCCAACAGTCGGCTTATCCCGGAACAGGACCATTGGAGAATCTGGCTTCTCACTTGGCAGACCCATGGCACAACAACATTGGCGATGTCATCATCCCCAGATCAATTATGCCTTGA 606 54.29 MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDVIIPRSIMP* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5428671 5430473 + Vvi13g497 Vvi13g497 774283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g497 201 Pfam Chlorophyll A-B binding protein 12 166 IPR022796 -
Vvi13g497 201 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 13 192 - -
Vvi13g497 201 Gene3D Chlorophyll a/b binding protein domain 6 192 - -
Vvi13g497 201 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 13 192 IPR001344 GO:0009765|GO:0016020
Vvi13g497 201 SUPERFAMILY Chlorophyll a-b binding protein 3 195 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g497 K08907 - vvi:100263275 426.017