Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g498 ATGAAATTAGCTAACAACACGACCCATTTTTCATGCACATGCAAAGCAAATAATAGATTCTCTTCCTCCAATGGCGTCTCTCTCGGGTGGCGAGGGGTTCATGTGCGGTATTACATCGAACACTTCTCAGGCCTATTGCTGGGACTTGTCAAATTCAGAGAAGTTGATCTGATTCTTGATTGCTGGGGTGTTCATTTGCAGTCTACTCAGGATTATAATCCTCCTTTGCAGTTATGCAGTCCAGGAGTTTGTTCATCGGGTGGATGTGGCGATGGCAAATTTGCATTTAACGCAAGCATACTCAATGAGCCGGACTTGATGAGCTTGTGCGTTAGAAAGGATTTGAAAATCTGCTTGCCTTGTGGTTCAAATTGTTCTGAAGGCTTTTTCCCTTCTAGTGTGTGTACTGAGAATGCAGATAGGATGTGCATTGCTTGTTCTCTCTGCCAGAACAGCTCTTGTTGGGATGTTTGTGGTCTTCCTCCTTCATCGGATATTTCGCCTCAGGAGCGGCATGAAATGAAGAAACTAATCCTCATTATTGGATCATCTGCATTGGGTTCCATACTAGTTTTGTCTCTGTGTTGTCTTCTTCCCAGGATGATTGAGTCTAAGAATGAAGAGAAGGAGAAAAAATGGTGCATCTCTTGTGTAAGCAAGCCAGGGGTGGAGGCTGACCCCAGCCCTGATCCACAAACCCCTCTCCCTGTGACCCCATGTGTTGGAACAACACAGGTGTTCAGGCTCTCGGAGCTAAAAGACGCTACAAATGGTTTCAAGGAGTTCAATGAGCTTGGTCGAGGAAGCTACGGCTTTGTCTACAAAGCGGTTCTTGCAGATGGTAGGCAAGTAGCAGTCAAGAGGGCTAATGCTGCTACCATAATTCATACCAACAGCCGAGACTTCGAAGCAGAACTGGAAATTCTATGCAATGTTAGGCATAACAATATTGTGAACTTGTTGGGTTATTGCGCTGAAATGGGGGAGAGGCTATTAGTCTACGAATTCATGCCTCATGGAACGCTGCACGACCATCTCCACGAGGAGCTCTCTCCCCTGAATTGGAACCTGAGGTTGAAGATTTCATCGCAGGCGGCTAGAGGGCTCGAGTACTTAAATGGAGGTATGGAGAGTGATGTCTACAATTTTGGAATTGTTCTGTTAGAGATTTTGAGTGGAAGAAAAGCTTATGACAGGGATTATACACCTCCAGGAATTGTTGAATGGGCAGTTCCTTTGATAAGGCAGGGCAAGGCAGCTGCCATTGTAGACCACAATGTTCCTCTGCCAAGAAATGTAGAACCCCTTCTGAAGCTTGCGGACATAGCAGAGCTTGCATTGAAGGAAAATCCTAATGAACGTCCTACCATGCCTGAGGTGGTGGTCTTGTTGGATCAGATTCTGAAGACTGGATTGATCTTTTAA 1425 45.47 MKLANNTTHFSCTCKANNRFSSSNGVSLGWRGVHVRYYIEHFSGLLLGLVKFREVDLILDCWGVHLQSTQDYNPPLQLCSPGVCSSGGCGDGKFAFNASILNEPDLMSLCVRKDLKICLPCGSNCSEGFFPSSVCTENADRMCIACSLCQNSSCWDVCGLPPSSDISPQERHEMKKLILIIGSSALGSILVLSLCCLLPRMIESKNEEKEKKWCISCVSKPGVEADPSPDPQTPLPVTPCVGTTQVFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHTNSRDFEAELEILCNVRHNNIVNLLGYCAEMGERLLVYEFMPHGTLHDHLHEELSPLNWNLRLKISSQAARGLEYLNGGMESDVYNFGIVLLEILSGRKAYDRDYTPPGIVEWAVPLIRQGKAAAIVDHNVPLPRNVEPLLKLADIAELALKENPNERPTMPEVVVLLDQILKTGLIF* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5432136 5436480 - Vvi13g498 Vvi13g498 774284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g498 474 ProSiteProfiles Protein kinase domain profile. 259 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g498 474 SUPERFAMILY Protein kinase-like (PK-like) 233 464 IPR011009 -
Vvi13g498 474 Pfam Protein tyrosine and serine/threonine kinase 263 373 IPR001245 GO:0004672|GO:0006468
Vvi13g498 474 PANTHER OS01G0750732 PROTEIN 374 473 - -
Vvi13g498 474 PANTHER OS01G0750732 PROTEIN 52 373 - -
Vvi13g498 474 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR2 374 473 - -
Vvi13g498 474 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR2 52 373 - -
Vvi13g498 474 ProSitePatterns Protein kinases ATP-binding region signature. 265 287 IPR017441 GO:0005524
Vvi13g498 474 Gene3D Phosphorylase Kinase; domain 1 235 336 - -
Vvi13g498 474 Gene3D Transferase(Phosphotransferase) domain 1 337 375 - -
Vvi13g498 474 Gene3D Transferase(Phosphotransferase) domain 1 376 471 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g633 Vvi13g498 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76166 PF07714 PK_Tyr_Ser-Thr 3.20E-22 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g498 - - vvi:100242791 822.002