Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g5 ATGGAGGAGGCAGCTCTTGTTGTGAAGATGCTTTGCTCCGTGTTGGTTGTGGGGGTGTTCTGCATATTCCTTCATCTCTACAATCTTATGTGGGTAAGGCCGGAAAGGCTGAGGGGAAAGCTGAGGAGGCAAGGCATCCGAGGGCCTCCGCCTTCATTTATATACGGGAATGTCCCTGAGATGCAGAAAATTCAATTGTTGATGGCGATGAAGCCTCCCAACCATGCTCAGATTGTGGCCCATGATTACACTTCTACCCTCTTCCCCTACTTCGAGCAATGGAGAAAAGCATACGGTCCTGTATACACGTATTCAACTGGGAATAGGCAACATTTGTACGTGAACCATCCGGAAATGGTGAAGGAAATGAATCAGAGTACGAGCTTGGAGTTGGGAAAGCCTTCTTATGTGACCAAGACTCTTGCACCAATGCTTGGTAATGGCATTCTCAGGTCCAATGGCAATACTTGGGCTCACCAGAGGAGGATCGTTGCACCCGAGTTCTTCATGGACAAGGTCAAGGGGATGGTGGGACTCATGCTGGAGTCAGCACAGCCACTGCTGACGAAATGGGAGGACTGCATTCAAGCACATGGTGGAGTCTCAGCGGATGTGATGGTGAATGAGGATTTGAGAAGCGCCTCAGCAGATGTCATCTCAAGGGTTTGCTTCGGAAGCAGTTATGGTAAAGGCAAACAGATTTTCTCCAAGCTCAGGTCTCTTCAACAACTCATTACCAACCAGGCTTTCCTTTTCGGTGTTCCCAGTTTCAGATTTCTCTGGGCCAACAAGCAAAAGGAGCTAAAAAACTTGGAGAGAGAGGTAGAATCATTGATATGGAAAGCAGTAAAAGAGCGAGAACAAGAATGCTTAGAGACATCGACCCTATCATCTGACAAAGATCTGATGCAACTGCTACTGGAGAGTGCCATCAATGATCCAAATTTGGGCCAGGCCTCGTCCAAGCGTTTTATAGTTGATAATTGCAAAAGCATATACTTTGCAGGGCATGAGTCTACTGCTGTTGCTGCCTCCTGGTGCTTGATGCTATTGGCTTTACATCCAGATTGGCAAGCTCGAATTCGGGCAGAGATAGCCGAGGTTTGCGGGGATAACATGCCAGATGCAGATTCAATCACCAAGATGAAATGGATGACTATGGTGATTCAAGAAACCCTGCGGCTGTATCCACCGGCAGCATTCGTGTCAAGGGAAGCGCTGGAGGAAATCCAAGTGGGTAATTTCATTGTCCCAAAGGGTGTATGCATATGGACCTTGATTCCAACTCTGCACCGGGATACGGATATCTGGGGGCCAGATGCCAACCAGTTCAAACCAGAGAGGTTTGAAAATGGGGTCTCTAAAGCTTGCAAATTTCCCCAAGCCTACATTCCATTTGGATTGGGTCCTCGCCTATGCCTTGGTCGCAACTTTGCCATGGTCCAATTGAAGATTATCCTCTCCCTCATCATCTCCAAATTTACATTCACATTGTCGCCTACATATCGCCATTTTCCTGTCTACAGAATGATTGTAGAACCTGGTGATGGTGTACATATCCGTATTCGAAAGATCTGA 1578 47.34 MEEAALVVKMLCSVLVVGVFCIFLHLYNLMWVRPERLRGKLRRQGIRGPPPSFIYGNVPEMQKIQLLMAMKPPNHAQIVAHDYTSTLFPYFEQWRKAYGPVYTYSTGNRQHLYVNHPEMVKEMNQSTSLELGKPSYVTKTLAPMLGNGILRSNGNTWAHQRRIVAPEFFMDKVKGMVGLMLESAQPLLTKWEDCIQAHGGVSADVMVNEDLRSASADVISRVCFGSSYGKGKQIFSKLRSLQQLITNQAFLFGVPSFRFLWANKQKELKNLEREVESLIWKAVKEREQECLETSTLSSDKDLMQLLLESAINDPNLGQASSKRFIVDNCKSIYFAGHESTAVAASWCLMLLALHPDWQARIRAEIAEVCGDNMPDADSITKMKWMTMVIQETLRLYPPAAFVSREALEEIQVGNFIVPKGVCIWTLIPTLHRDTDIWGPDANQFKPERFENGVSKACKFPQAYIPFGLGPRLCLGRNFAMVQLKIILSLIISKFTFTLSPTYRHFPVYRMIVEPGDGVHIRIRKI* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 98016 101708 + Vvi13g5 Vvi13g5 773791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g5 525 Coils Coil 261 288 - -
Vvi13g5 525 Pfam Cytochrome P450 85 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 SUPERFAMILY Cytochrome P450 82 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS E-class P450 group I signature 95 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PANTHER CYTOCHROME P450 714A1-LIKE ISOFORM X1 11 520 - -
Vvi13g5 525 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Vvi13g5 525 Gene3D Cytochrome P450 32 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g5 525 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 520 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g5 K20661 - vvi:100258799 1058.9