Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g51 ATGACACCCCTCTCCGTCGCCGTCGCAGCAGTCGTCACCGTTGTCATCGCTGCGGTTTCTTCTCCGGCGCTGGTTCATGGGCTGGGCTCGGGCTCCACTCTCGCCGTCAGCTACGGCTCGGGGGCGGTCTGCGGCGTCGTGGCCGGGGAGCGGTACCAGAGAATCGAGTGTTACCGGGGCGGCGAAACCATCTCCATCGAGCCCAACATTTCCTCCTTCTCGTCCATCTCCGGCGGCCGGGACTTCTTCTGCGGCCTGAGGTCCGGGGGTTTCGCCCTGTTCTGCTGGAACACTAGCTTCGTGGCGAAAAGAATTTACTTCAATTACACAGTTCTGCTGGAGAATCTCGCAGTGGGTGACGATCAGGTGTGCGCGACGGTAAACGGTACCGGAGTTGTGAAGTGCTGGAGAGGTGAAAACTCGAGTTCCCTGTCTGAGTCCAGTCAATTTTCTTCAATTTCATCTGGGTTAGGATTTTCCTGCGGTATTTTGGTTAATAATAGAACCGTTCAATGTTGGGGAAGTAACACAATTGCGAATCAAATTCAACAAGAGTTTGGAAATACTCCGATGTTGAGTATTATGGCGGGCGGTTCACACGTTTGTGGATTGAACACAACTGGGTATTTGTTGTGTGAAGGGAGTAACGATTCAGGGCAGTTGAATGTTCCTTCTGGTTCAGCTTATGAGTTTTCGAATCTGTCGCTTGGAGAGAATCATAGTTGTGCCATTCGGCAATCTAATGGATCAAAAATCCACAACTCTACCAAGAAGCTTGTTGGGTTTTGCCAAGAAATGGATGAAAGGCTTTTGGTGTATGAGTACATGAAAAATGGTGCGCTCTATGATCATTTACATGACAAAAACAATATCGAAAAGAGTAGTAATGTGTTGAATTCATGGAACGATGTCTATGGGCTTGGAGTTGTTTTGCTGGAGCTTTTGACAGGGAAGAGAGCGATATTCAAGGATGGTGAAAATGGGGGGACTCCCATTAGTGTGGTGGACTTTGCAGTGCCGGCAATTATTGCCGGAGAACTGATGAAGGTCTTGGATCCGAGGGTTGGGCCACCGCAGACGAATGAAGCGGAGGCGGTTGAGCTGGTGGCTTACACTGCAATGCATTGTGTGAACTTGGAGGGGAAGGAAAGGCCAACCATGGCTGACATTGTAGCTAATTTGGAACGTGCATTGGCTCTCTGTGAAGACAGCCATGGCAGCATCTCTAGTGGCACAATTTCCATTGTTTCAGATTGA 1257 49.72 MTPLSVAVAAVVTVVIAAVSSPALVHGLGSGSTLAVSYGSGAVCGVVAGERYQRIECYRGGETISIEPNISSFSSISGGRDFFCGLRSGGFALFCWNTSFVAKRIYFNYTVLLENLAVGDDQVCATVNGTGVVKCWRGENSSSLSESSQFSSISSGLGFSCGILVNNRTVQCWGSNTIANQIQQEFGNTPMLSIMAGGSHVCGLNTTGYLLCEGSNDSGQLNVPSGSAYEFSNLSLGENHSCAIRQSNGSKIHNSTKKLVGFCQEMDERLLVYEYMKNGALYDHLHDKNNIEKSSNVLNSWNDVYGLGVVLLELLTGKRAIFKDGENGGTPISVVDFAVPAIIAGELMKVLDPRVGPPQTNEAEAVELVAYTAMHCVNLEGKERPTMADIVANLERALALCEDSHGSISSGTISIVSD* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 525664 528037 - Vvi13g51 Vvi13g51 773837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g51 418 Gene3D - 21 179 IPR009091 -
Vvi13g51 418 Gene3D - 180 257 IPR009091 -
Vvi13g51 418 Pfam Regulator of chromosome condensation (RCC1) repeat 152 177 - -
Vvi13g51 418 Gene3D Transferase(Phosphotransferase) domain 1 274 408 - -
Vvi13g51 418 SUPERFAMILY Protein kinase-like (PK-like) 253 399 IPR011009 -
Vvi13g51 418 SUPERFAMILY RCC1/BLIP-II 30 249 IPR009091 -
Vvi13g51 418 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 250 - -
Vvi13g51 418 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 253 302 - -
Vvi13g51 418 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 303 416 - -
Vvi13g51 418 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 253 302 IPR044815 GO:0004674
Vvi13g51 418 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 250 IPR044815 GO:0004674
Vvi13g51 418 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 303 416 IPR044815 GO:0004674
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g633 Vvi13g51 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g51 - - vvi:100243297 471.47