Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g510 ATGATCTTTATCCTTGTTTACTGCACTGCCGGCATTTCTGGGGGACACATTAACCCGGCGGTGACCTTTGGGCTGTTCCTGGCCCGGAAGGTGTCGCTGATCCGAGCAATATTGTACATGGTGGCTCAGTGTCTTGGAGCCATTTGCGGTGTGGGTCTCGTCAAAGCCTTCCAATCTGCTTACTATGATCGCTACGGGGGCGGTGCCAACGAGCTCTCCACCGGCTACAGCAAAGGCACCGGCTTGGGCGCTGAGATCATTGGAACTTTTGTCCTTGTCTACACCGTCTTCTCTGCAACTGACCCCAAGAGGAGTGCCAGAGACTCCCATGTTCCTGTTCTGGCACCTCTTCCAATTGGGTTTGCCGTGTTCATGGTTCACTTGGCCACTATTCCTATCACTGGCACCGGTATCAACCCTGCCAGGAGTTTGGGGGCTGCTGTTATCTACAACAATGAGAAGGCCTGGGATGACCAGTGGATCTTTTGGGTTGGACCCTTCATTGGTGCAGCCATTGCAGCCTTCTACCACCAGTTCATATTGAGAGCTGGAGCTGTCAAGGCTCTTGGGTCATTCAGGAGCACCACTCATGTATGA 597 53.27 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQSAYYDRYGGGANELSTGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTTHV* 199
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 5602024 5605019 - Vvi13g510 Vvi13g510 774296
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g510 198 TIGRFAM MIP: MIP family channel proteins 2 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g510 198 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g510 198 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g510 198 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g510 198 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g510 198 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g510 198 SUPERFAMILY Aquaporin-like 2 182 IPR023271 -
Vvi13g510 198 PANTHER AQUAPORIN PIP2-2-RELATED 1 195 - -
Vvi13g510 198 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 195 IPR034294 -
Vvi13g510 198 Gene3D Glycerol uptake facilitator protein. 1 198 IPR023271 -
Vvi13g510 198 ProSitePatterns MIP family signature. 16 24 IPR022357 -
Vvi13g510 198 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi8g570 Vvi13g510 ECH
Vvi6g267 Vvi13g510 ECH
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g510 K09872 - vvi:100233002 397.127