Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g514 ATGTCAACGCCCTCTAACTCGTCAACTAGCCTCAAGAGCAGCGGGGGCGGCGCGGGGGGAGGCGGCGGCGGCGATGGAAAGTATGTGCGTTACACTGCGGAGCAGGTGGAGGCGCTGGAGAGGGTGTACGCGGAGTGTCCGAAGCCCAGCTCCACTCGCCGGCAGCAGCTGATCCGGGAGTGCCCGATTCTTTCCAACATTGAGTCAAAGCAGATCAAAGTCTGGTTTCAGAACCGCAGGTGCCGGGAGAAGCAGAAGAAAGAGGCTGTCCAACTTCAGTCTGTGAACAAGAAACTGAATTCAATGAATAAGCTGTTGATGGAGGAAAATGAACGGCTTCAAAAACAGGTGTCACAGCTAGTATATGAGAATGGATACATGAAGCAACAATTGCAAAATGTAACTGCAACAACTACTGATACAAGATGTGATTCTTTGGTTGCTACTCCTCAACATTCTTCAAGAACTGGAAATAATCCTATTGGGCTCCTCTCAATAGCTGAGGAGGCCATGGGGGAGTTCCTTTCAAAGGCTAAGGGAACTGCTGTTGATTGGGTCCAGATTCCTGGGATGAAGCCTGGTCCGGATTCGGTCGGGACTGTTGCCATTTCCCATAGTTGCAATGGAGTGGCAGCACGAGCCTGCAGTCTTGTATCTTTAGAACCTACAGAGATAATGGAGATCCTCAAAGACCGACAATCTTGGTTCAGAGATTGTCGGAAACTGGAAGTCTTCGCCAAGTTTCCAGCGGGAAATGGGGGAATACTTGAACTGATATACATGCAAGTTTATGCTCCAACTACACTGGCTCCTGCACGTGATTTCTGGACTCTAAGATATACTTCAAGTTTAGAAGATGGCAGCCTTGTGGTATGTGAGAGATCAATGTCTGGGTCTGGTGCTGGCCCAAATCCCTCTACCGCTTCACAATTTGTCAGAGCCAAGATGCTGCCCAGTGGCTATTTGATTCGGCCCTGTGAGGGGGGAGGTTCAATCATTCACATTGTTGACCACCTAGATCTTGAGGCATGGAGTGTACCTGAGGTGCTGCAACCACTTTACAAGTCTTCCAAACTTGTGGCACAGAAGATGACAGTTGCTGCTCTGCACCATATTAGGCAAATAGCTCAGGAAACAAGTGGTGATGTAACACATACTTTGGGCAAGCAGCCTGCTGTTCTGCGAGCTTTTAGACAAAAATTGAGCAGAGGATTCAATGATGCTATCAATGGATTTAATGATGATGGCTGGTCACTGATGCAAATTGATGGTGCTGAAGATTTAATAATATCTGTAAACTCAGCCAAGAACTTGAGCACCATTTCAAATTCGACAGCTGCTCTTTCCTTGCCTGGAGGAATTCTCTGTGTGAAGGCTGCCATGCTACTCCAGAATGTTTCCCCTTCACTGATGGTTCGATTCCTGAGGGAGCACCGTTCTGAGTGGGCTGATTTCAGTGTTGATGCATATGCCGCTGCATCATTGAGAGGTGACTCGTTTGCTTTGCCCGGATTGAGCCCCTCCCAGTTTTCTGGCAACCAAACTACCATGTCTCTTGGCATCACAGCTGAAAATGAGATACTAGAAATAATTCAACTTGAAGGCCATGCTCTCAGCCAAGAAGAGGCTTCTGTTATGTGGAGGAACATTCATCTTTTACAGATTTGTAATGGAGTGGATGATAATGCTGGGGAAGCCTGCTCAGAACTAGTTTTTTCTCCAATTGATGAAATGTTTCCAGATGATGCTCCGATTCTGTCCTCTGGGTTTCGGATCTTGGAGTTGGATGCAAAAACATGTGACAGACAAGATATGTTGGCTGCAAAACGAATGATGAATCTAGCATCCAATCTTGAAGTACGCTCATCCGACGCTACTGGATGCACAGCTTCATCTAGTGACTCTCGCTCAGTGTTGATTATTGCCTTCCAGTTTCTTTTTGAGAGCCATCTTCAGGGAAATGTTGTGACTATGGCTCGACAGTATGCCCGCAATGTGATTTCCTCTGTTCAGAGGGTTGCTATGGCAATAACCCCATCTGGATTGCATGGGAGGCCAAAGTCAACCTCAGGCTCTCCTGAAGCTCTCACCCTTGCTCGTTGGATCTGCCAAAGCTATAGTTTCCATTTAGGAGATCAATTGCTAAAGTCCAATTACCATGGTGGAGACTCGGTGTTGAAACAGCTCTGGCATCATCAGGATGCCATATTATGCTGCTCATTGAAGTTGCACCCCGTTTTCATATTTGCCAACCAAGCAGGGCTTGACATGCTGGAGACTACACTGGTAGCTTTGCAGGATGTTTCACTGGACAAGATATTTGATGAGGCTGGTCGGAAGGCATTATGTAATGTCGTTCCCCAGGTTATGCAGCAGGGTTTTGCCTTGGTACCAGCTGGAATTGGTATGTCAACCATGGGGCGTCATGTTTCATTCGAGCAAGCCATTGCTTGGAAGGTCCTTACTGAAGAAAATACCGTTCACTGCCTCGCCTTTGCCTTCATTAACTGGTCTTTTGTGTAG 2523 47.25 MSTPSNSSTSLKSSGGGAGGGGGGDGKYVRYTAEQVEALERVYAECPKPSSTRRQQLIRECPILSNIESKQIKVWFQNRRCREKQKKEAVQLQSVNKKLNSMNKLLMEENERLQKQVSQLVYENGYMKQQLQNVTATTTDTRCDSLVATPQHSSRTGNNPIGLLSIAEEAMGEFLSKAKGTAVDWVQIPGMKPGPDSVGTVAISHSCNGVAARACSLVSLEPTEIMEILKDRQSWFRDCRKLEVFAKFPAGNGGILELIYMQVYAPTTLAPARDFWTLRYTSSLEDGSLVVCERSMSGSGAGPNPSTASQFVRAKMLPSGYLIRPCEGGGSIIHIVDHLDLEAWSVPEVLQPLYKSSKLVAQKMTVAALHHIRQIAQETSGDVTHTLGKQPAVLRAFRQKLSRGFNDAINGFNDDGWSLMQIDGAEDLIISVNSAKNLSTISNSTAALSLPGGILCVKAAMLLQNVSPSLMVRFLREHRSEWADFSVDAYAAASLRGDSFALPGLSPSQFSGNQTTMSLGITAENEILEIIQLEGHALSQEEASVMWRNIHLLQICNGVDDNAGEACSELVFSPIDEMFPDDAPILSSGFRILELDAKTCDRQDMLAAKRMMNLASNLEVRSSDATGCTASSSDSRSVLIIAFQFLFESHLQGNVVTMARQYARNVISSVQRVAMAITPSGLHGRPKSTSGSPEALTLARWICQSYSFHLGDQLLKSNYHGGDSVLKQLWHHQDAILCCSLKLHPVFIFANQAGLDMLETTLVALQDVSLDKIFDEAGRKALCNVVPQVMQQGFALVPAGIGMSTMGRHVSFEQAIAWKVLTEENTVHCLAFAFINWSFV* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5640474 5655021 + Vvi13g514 Vvi13g514 774300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g514 840 SUPERFAMILY Homeodomain-like 23 91 IPR009057 -
Vvi13g514 840 SMART START_1 165 375 IPR002913 GO:0008289
Vvi13g514 840 ProSiteProfiles 'Homeobox' domain profile. 22 86 IPR001356 GO:0003677
Vvi13g514 840 Gene3D - 198 386 IPR023393 -
Vvi13g514 840 MobiDBLite consensus disorder prediction 1 15 - -
Vvi13g514 840 CDD bZIP 79 118 - -
Vvi13g514 840 CDD homeodomain 27 87 IPR001356 GO:0003677
Vvi13g514 840 Coils Coil 82 123 - -
Vvi13g514 840 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Vvi13g514 840 Pfam START domain 166 373 IPR002913 GO:0008289
Vvi13g514 840 SUPERFAMILY Bet v1-like 165 377 - -
Vvi13g514 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 17 840 - -
Vvi13g514 840 Pfam MEKHLA domain 697 839 IPR013978 -
Vvi13g514 840 Gene3D - 22 94 - -
Vvi13g514 840 SMART HOX_1 24 90 IPR001356 GO:0003677
Vvi13g514 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 840 IPR044830 GO:0003700
Vvi13g514 840 MobiDBLite consensus disorder prediction 1 27 - -
Vvi13g514 840 Pfam Homeodomain 28 85 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g262 Vvi13g514 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13898 PF01852 START 8.40E-49 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g514 K09338 - vvi:100261558 1626.3