Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g519 ATGATCAGTCTTATGGATCCCATGAAGGAGCTGGACAAGTGCTTGGATCCTCAATTATGGCATGCCTGTGCAGGAGGAATGGTGCATATGCCATCCCTTAATTCTAGGGTCGTCTACTTCCCTCAGGGCCATGCTGAACACGCCTATGGGAATGTGGATTTTGGGAATCCCCGGATTCCCCCGCTTGTCCTCTGCAGAGTATCTGCTGTAAAATACTTGGCGGATCCAGAGTCAGATGAGGCTCCTGAGAAACCAGCTTCTTTTGCAAAAACCTTGACACAATCTGATGCAAATAATGGTGGAGGATGGAGCAACTTTGTAAACAAGAAGAATCTTGTTGCAGGGGACTCGATTGTGTTCTTGAGAGCAGAAAATGGGGATCTCTGTGTTGGAATTCGGCGGGCAAAGAGGGCTGGCTGTGGACCTGAGGGATATTCTGGGTTCTTGAGGGAGGATGAGAATAGGCCGATATTAACACATTCCAATGCGGGATTCAGGGGAAAGGGAAGAGTAAGGGCTGAATCTGTTGCTGAAGCTGCAACACTTGCTGCGAATGGCCAGCCCTTTGTTATTGTTTACTATCCACGTGCAAGCACTCCTGAGTTTTGTGTGAAGGCCTCATCTGTGAGAGCGGCAATGCAGATCCAGTGGTGTCCTGGAATGAAGTTCAAAATGGCTTTTGAAACCGATGATTCTTCTCGGATAAGCTGGTTCATGGGAAACATTTCTTCTGTTCACGTTAATGACCCCATTCGCTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTAACATGGGATGAGCCAGATTTACTCCAGAATGTGAAGCGAGTTAACCCCTGGTTGGTTGAATTGGTGTCACACGTGCCCTCTATCCATCTATCCCCCTTCTCACCACCAAGAAAGAAGTTGCGGCTTCAACAACAGTCAGAATTCCCCCTAGTTGGCCAAATTCCAATGCCATCATTTTCCAGCAACGCCCTCAGGCCAAGCAGCCCCTTGTGTTGTATATCTGACAACATTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGACTATCTTCATCAGATCTCCATTTCAACAAACTGCAGTTGGGTCTGTTTCCACTTGGTTTACAGCAGCAGCTTGATCAGACTGCCCCACCTTCCAGTATTCTTAGTGGGAATACCATGAGCAACCATGAGAACAATGAAAATATTTCTTGCTTGCTTACAATTGGAAATTCCACACAGAACTCGAAGAAAAATAATGAAATAAAGGCACCTTATTTCTTCCTCTTTGGTCAACCTATTCTCATTGAGCAGCAGGTTTCTCAGAGCTGCTCTGGTGATACAGCTGGAATCAGTTCATCAGATGGAAATCCAGAGAAAACGCCAAATTTCTCAGATGGTTCTGGATCTGCATTTCACCAGAATGGCCCACAGGAGAGCTCCTCGGATGAAGGGCTCCTCACTTGGTACAAAGATCACCAAAAAACTAATCTTGGCCTGGAGACTGGTCACTGCAAGGTGTTCATGGAATCAGAGGATGTGGGTCGGACTCTTGATCTGTCAATACTTGGTTCATATGAAGAACTCTATAGAAAGTTGGCCAACATGTTTGGCATAGAAAGAGCTGAGATGCTGAGCAATGTACTCTACCGGGATGAGGCGGGCATTGTTAAGCACATTGGAGATGCACCCTTTGGTGAGTTTTTGAAGACAGCAAGAAGGCTAACAATTCTGGCCGATTCGGCAGCAACACCCTAG 1752 46.97 MISLMDPMKELDKCLDPQLWHACAGGMVHMPSLNSRVVYFPQGHAEHAYGNVDFGNPRIPPLVLCRVSAVKYLADPESDEAPEKPASFAKTLTQSDANNGGGWSNFVNKKNLVAGDSIVFLRAENGDLCVGIRRAKRAGCGPEGYSGFLREDENRPILTHSNAGFRGKGRVRAESVAEAATLAANGQPFVIVYYPRASTPEFCVKASSVRAAMQIQWCPGMKFKMAFETDDSSRISWFMGNISSVHVNDPIRWPNSPWRLLQVTWDEPDLLQNVKRVNPWLVELVSHVPSIHLSPFSPPRKKLRLQQQSEFPLVGQIPMPSFSSNALRPSSPLCCISDNIPAGIQGARHAQFGLSSSDLHFNKLQLGLFPLGLQQQLDQTAPPSSILSGNTMSNHENNENISCLLTIGNSTQNSKKNNEIKAPYFFLFGQPILIEQQVSQSCSGDTAGISSSDGNPEKTPNFSDGSGSAFHQNGPQESSSDEGLLTWYKDHQKTNLGLETGHCKVFMESEDVGRTLDLSILGSYEELYRKLANMFGIERAEMLSNVLYRDEAGIVKHIGDAPFGEFLKTARRLTILADSAATP* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5744330 5748409 - Vvi13g519 Vvi13g519 774305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g519 583 ProSiteProfiles B3 DNA-binding domain profile. 102 136 IPR003340 GO:0003677
Vvi13g519 583 Gene3D - 217 290 - -
Vvi13g519 583 CDD B3_DNA 100 134 IPR003340 GO:0003677
Vvi13g519 583 PANTHER AUXIN RESPONSE FACTOR 16 7 80 - -
Vvi13g519 583 PANTHER AUXIN RESPONSE FACTOR 16 82 103 - -
Vvi13g519 583 PANTHER AUXIN RESPONSE FACTOR 16 102 577 - -
Vvi13g519 583 SUPERFAMILY DNA-binding pseudobarrel domain 100 137 IPR015300 -
Vvi13g519 583 MobiDBLite consensus disorder prediction 444 482 - -
Vvi13g519 583 ProSiteProfiles PB1 domain profile. 500 580 IPR000270 GO:0005515
Vvi13g519 583 Gene3D - 99 136 IPR015300 -
Vvi13g519 583 Pfam Auxin response factor 179 262 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi13g519 583 Gene3D - 498 582 - -
Vvi13g519 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 82 103 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi13g519 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 102 577 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi13g519 583 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 80 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g564 Vvi13g519 ECH
Vvi6g258 Vvi13g519 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g519 - - vvi:100265118 1121.69