Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g527 ATGGAACTTTCAAATGGAAACCACTGCCACACAAATGGGAAGGCCTCCATTGAGAGCTTTTGCATGGGAGACACTGGTACTAAAGCTGCTGCCGATCCCCTCAACTGGAACATGGCGGCGGAGTCCCTCAAGGGGAGTCACCTGGATGAGGTGAAGCGGATGGTGGAGGAGTACCGGAGGCAGGTGGTGCAGCTGGGCGGTGAGACGCTCACAATATCTCAGGTGGCCGCGGTGGCCTCCCGCGATACTGGGGTGACGGTGGAGCTGTCGGAGGAGGCGAGAGAGGGAGTAAAGGCCAGCAGTGACTGGGTCATGGACAGCATGAACAATGGTACAGACAGCTACGGCGTGACCACAGGTTTCGGTGCTACCTCTCACAGAAGAACCAAACAAGGCGGAGCCCTCCAAATGGAGCTCATCAGGTTTTTGAATGCCGGAATTTTTGGAAACGGGACGGAATCTTGCCACACACTGCCTCACTCTGCAACAAGGGCATCCATGCTGGTGAGGATCAACACACTTCTTCAAGGATACTCGGGCATTAGATTTGAGATATTGGAGGCTATCACCAAGCTCATCAACCACAACATTACCCCTTGCTTGCCTCTCCGGGGCACCATCAGCGCATCCGGTGACCTTGTTCCTCTCTCCTACATTGCTGGGCTTTTACTTGGGAGGTCCAGTTGCAAGGCTGTCGGGCCCAATGGGGAGCCCCTCAGTGCTGAGGAGGCCTTCCGGGTTGCAGGAATCAAGGGTGGATTCTTTGAACTGCAGCCCAAGGAGGGGCTTGCTCTAGTCAATGGCACTGCTGTTGGGTCTGGCATGGCCTCCATGGTTCTCTTTGAAGCAAACATCCTTGCAGTCCTTTCGGAACCTAAACAAGACCGATACGCCCTCCGAACATCTCCCCAGTGGCTTGGCCCCCAGATTGAAGTGATCAGAGCAGCAACGAAGAATAAAGCTCTACATGGGGGCAATTTCCAAGGGACCCCAATTGGTGTTTCCATGGACAACACTAGGCTTGCCATTGCCTCCATCGGAAAGCTCATGTTTGCACAATTCTCCGAGCTTGTTAATGACTTCTACAACAATGGGTTGCCTTCAAATCTGTCGGGTGGCCGCAATCCAAGCTTGGACTATGGCTTCAAAGGTGCCGAGATTGCAATGGCCTCTTACTGCTCCGAGCTCCAGTTCCTTGCTAATCCTGTGACCAACCATGTCCAGAGCGCAGAGCAACACAACCAAGATGTGAACTCCTTGGGACTCATTTCTTCAAGAAAAACTGCTGAAGCCGTGGACATATTGAAGCTCATGTCCTCCACTTTCTTGATTGCCTTATCCCAAGCCATTGATCTGAGGCATTTGGAGGAGAATCTCAAGAACACAGTGAAGAACACGGTGAGCCAAGTGGCCAAGAGAGTCCTAACCATTGGCTTCAATGGTGAGCTTCACCCCTCCAGGTTCTGCGAAAAAGACTTGCTCAAAATTGTCGATAGAGAACACGTTTTCGCATACATTGATGACCCCTGCAGCTCCACCTATCCATTAATGCAGAAGCTAAGGCAAGTCCTAGTCGAGCATGCTCTGATCAATGAACGGAAATTCTGCCATTTCCAACAGAATCAAGGACTGCAGATCCTACCCTCTGTGTTCACAGCTATGTGTGCAGGGAAGCTCATTGATCCACTGCTGGATTGTTTGAAGGAGTGGAATGGAGCTCCTCTCCCAATCTGCTAG 1737 51.93 MELSNGNHCHTNGKASIESFCMGDTGTKAAADPLNWNMAAESLKGSHLDEVKRMVEEYRRQVVQLGGETLTISQVAAVASRDTGVTVELSEEAREGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQMELIRFLNAGIFGNGTESCHTLPHSATRASMLVRINTLLQGYSGIRFEILEAITKLINHNITPCLPLRGTISASGDLVPLSYIAGLLLGRSSCKAVGPNGEPLSAEEAFRVAGIKGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLSEPKQDRYALRTSPQWLGPQIEVIRAATKNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLIALSQAIDLRHLEENLKNTVKNTVSQVAKRVLTIGFNGELHPSRFCEKDLLKIVDREHVFAYIDDPCSSTYPLMQKLRQVLVEHALINERKFCHFQQNQGLQILPSVFTAMCAGKLIDPLLDCLKEWNGAPLPIC* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5881320 5885139 + Vvi13g527 Vvi13g527 774313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g527 578 Pfam Aromatic amino acid lyase 70 290 IPR001106 -
Vvi13g527 578 Pfam Aromatic amino acid lyase 317 466 IPR001106 -
Vvi13g527 578 CDD PAL-HAL 68 453 IPR001106 -
Vvi13g527 578 Gene3D - 23 269 IPR024083 -
Vvi13g527 578 SUPERFAMILY L-aspartase-like 32 578 IPR008948 GO:0003824
Vvi13g527 578 Coils Coil 48 68 - -
Vvi13g527 578 Gene3D Fumarase/aspartase (Central domain) 318 578 - -
Vvi13g527 578 PANTHER HISTIDINE AMMONIA-LYASE 289 533 IPR001106 -
Vvi13g527 578 PANTHER HISTIDINE AMMONIA-LYASE 26 291 IPR001106 -
Vvi13g527 578 PANTHER HISTIDINE AMMONIA-LYASE 548 578 IPR001106 -
Vvi13g527 578 Gene3D Fumarase/aspartase (Central domain) 277 317 - -
Vvi13g527 578 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
Vvi13g527 578 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 548 578 - -
Vvi13g527 578 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 289 533 - -
Vvi13g527 578 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 26 291 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g244 Vvi13g527 ECH
Vvi8g553 Vvi13g527 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g527 K10775 - tcc:18586419 592.808