Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g546 ATGTATTACAATTTGGTGAGGAGGGTCAAGCTTTTGAGTCCTCTGTTTGAGGAATTGAAGGACAGCGAAGAGGAGCTCGAGGACAGCGAGATTCGAGCCTTTGAGTTGCTGAGAGTTGCTCTCGATTCCGCTATGGACCTTCTCAAATTGGTCAACGAAGGGAGTAAGCTTTATCAGGCTCTGCAAAGGGACAAAATTGCAGATAAGTTTTGCCAAATGACAGATCAAATTGAAGCGTCGTTGAGCAGTATTCCTTATGATAAACTCAATGTATCAGAGGAAGTTCAAGAACAGATTGAGCTTGTTCATGCTCAATTCAAAAGAGCGAAGGGAAGAACAGACTCACCTGATTTACAACTAGATAGGGATTTAGAAATAGCACAGAAAGAAAAAGACCCTGATCCTGAAATTCTAAGAAGACTATCCGAAAACCTGCAACTCAGGACTATCAATGATTTGAAGAAAGAATCTCTGGCTTTGCATGAAATGGTTATCTCAAGTTCTGTAGATCCAGGGGACTGCTTTGCAAAGATGTCATCTCTGCTTAGAAAGCTCAAGGATTATGTATTAACAATAAACCCTGAAGCAGACACATCAGAGGGTGAAAAGGGCTTCATCAAGCACAGATCTCCTGTTATCCCAGATGATTTCCGGTGCCCAATCTCTCTTGAACTGATGAGAGATCCTGTTATAGTCTCTACTGGACAGACATATGAAAGATCCTGCATTCAAAAATGGCTGGATGCAGGGCACAAGACCTGTCCTAAGACGCAGCAGACTCTGTTGCACACTGCCTTAACACCCAACTATGTTTTGAAGAGTTTAATTGCTTTATGGTGTGAGAGCAATGGCATTGAGCTCCCAAAAAATCAAGATAATTGTAGAAACAAGAAGACCGGAAAATTTGTTTCAGACTGTGATAGACCCGCTATTCATGCCTTATTGCAGAAACTACTTGACGGGAATCCAGAAATACAAAGAGCAGCAGCTGGTGAGCTCCGGTTGCTGGCAAAGAGGAATGCAGATAACAGAGTATGCATTGCTGAGGCAGGAGCCATTCCTCGGCTTGTAGAACTACTATCCTCCACAGATCCCCGGACCCAAGAGCATGCTGTTACAGCACTTCTCAACCTCTCCATAAATGAGGCTAACAAGGGAAGTATTGTAATATCAGGAGCTATTCCAGATATAGTGGACGTTCTAAAAACTGGCAGCATGGAAGCAAGAGAAAATGCTGCTGCAACCCTTTTCAGTTTATCGGTCATAGATGAGAACAAGGGAAACAAGGTGAGGGCTGTAAGGGCAGGGATTGTGGTGCCACTGATGAGATTCCTGAAGGATGCTGGGGGTGGAATGGTGGATGAAGCACTGGCAATACTGGCTATTCTTGCCAGCCATCAAGAGGGAAAATTGGCTATTGGCCAGGCTGAGCCCTTCCCTGTTTTGGTGGAAGTGATAAAGACAGGTTCGCCTCGTAATAGGGAGAATGCTGCAGCCGTTTTGTGGTCGTTGTGTACAGGTGATGCACAGCATTTGAAAATAGCAAGAGAGCTTGGGGCAGAAGAGGCATTGAAGGAGCTTTCAGAGAATGGCACTGATAGGGCCAAGAGAAAAGCTGGGAATATTTTAGAGCTTCTTCAACGAGTTGAAGTTGTGGTCGACCCCTAA 1668 44.48 MYYNLVRRVKLLSPLFEELKDSEEELEDSEIRAFELLRVALDSAMDLLKLVNEGSKLYQALQRDKIADKFCQMTDQIEASLSSIPYDKLNVSEEVQEQIELVHAQFKRAKGRTDSPDLQLDRDLEIAQKEKDPDPEILRRLSENLQLRTINDLKKESLALHEMVISSSVDPGDCFAKMSSLLRKLKDYVLTINPEADTSEGEKGFIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGIELPKNQDNCRNKKTGKFVSDCDRPAIHALLQKLLDGNPEIQRAAAGELRLLAKRNADNRVCIAEAGAIPRLVELLSSTDPRTQEHAVTALLNLSINEANKGSIVISGAIPDIVDVLKTGSMEARENAAATLFSLSVIDENKGNKVRAVRAGIVVPLMRFLKDAGGGMVDEALAILAILASHQEGKLAIGQAEPFPVLVEVIKTGSPRNRENAAAVLWSLCTGDAQHLKIARELGAEEALKELSENGTDRAKRKAGNILELLQRVEVVVDP* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6301121 6305164 + Vvi13g546 Vvi13g546 774332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g546 555 SUPERFAMILY RING/U-box 212 288 - -
Vvi13g546 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 286 IPR013083 -
Vvi13g546 555 SUPERFAMILY ARM repeat 307 546 IPR016024 -
Vvi13g546 555 Gene3D - 289 449 IPR011989 -
Vvi13g546 555 SMART arm_5 381 421 IPR000225 GO:0005515
Vvi13g546 555 SMART arm_5 466 506 IPR000225 GO:0005515
Vvi13g546 555 SMART arm_5 425 465 IPR000225 GO:0005515
Vvi13g546 555 SMART arm_5 295 338 IPR000225 GO:0005515
Vvi13g546 555 SMART arm_5 340 380 IPR000225 GO:0005515
Vvi13g546 555 Gene3D - 1 86 IPR036537 GO:0007166
Vvi13g546 555 Gene3D - 450 551 IPR011989 -
Vvi13g546 555 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Vvi13g546 555 Pfam Armadillo/beta-catenin-like repeat 340 379 IPR000225 GO:0005515
Vvi13g546 555 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 1 426 - -
Vvi13g546 555 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 426 550 - -
Vvi13g546 555 Pfam U-box domain 213 283 IPR003613 GO:0004842|GO:0016567
Vvi13g546 555 PANTHER U BOX DOMAIN-CONTAINING 426 550 - -
Vvi13g546 555 PANTHER U BOX DOMAIN-CONTAINING 1 426 - -
Vvi13g546 555 SMART Ubox_2 216 279 IPR003613 GO:0004842|GO:0016567
Vvi13g546 555 CDD RING-Ubox_PUB 217 259 IPR045210 -
Vvi13g546 555 ProSiteProfiles U-box domain profile. 212 286 IPR003613 GO:0004842|GO:0016567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g546 - - vvi:100265038 1049.65