Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g55 | ATGGCTTCCATCGACTCCAGTCCTCGCACCGTTGAAGACATTTTCAAGGACTACAAAGCTCGACGCAGCGGCGTAGTTCAAGCTCTCACCTTCGATGTCGACGAATTCTACGCGCTATGCGATCCAGAGAAGGAGAATTTGTGTTTGTACGGACATCCGAATGGGTCATGGCATGTGGCTATGCCAGCGGAGGAAGTTCCGCCTGAGCTGCCGGAGCCGGCTTTAGGGATTAATTTTGCAAGAGATGGGATGAACCGGAGAGACTGGCTTGCGTTAGTTGCTGTGCATAGTGATTCTTGGTTGCTTTCTGTGGCATTTTATTTTGGTGCTAGCCTTAACCGTAACGACAGGAAGCGGCTATTTAGCATGATAAACGATCTGCCCACTGTCTTTGAAGCTGTAACCCAAGGAAAACTTGTCAAAGACAAACCCACTATGGATAGTGGAAGCAAATCGAAGAGTAGCACGAAGAGATCAATTGATGGCCAGGTGAGAAATGACCTAAGGCCACGAGATGAGGGCTATGTGGAGGATGACGATGAACACAGTGAAACCCTTTGTGGTAGCTGTGGGGGAAATTACAATGCTGATGAGTTCTGGATCGGCTGTGACATCTGTGAGAGGTGGTTCCATGGAAAGTGCGTGAAGATAACACCAGCCAAGGCTGAAAGTATCAAGCAGTATAAATGCCCTTCTTGCAGCTTGAAGAAGGGCAGGCTGAACTAA | 726 | 48.48 | MASIDSSPRTVEDIFKDYKARRSGVVQALTFDVDEFYALCDPEKENLCLYGHPNGSWHVAMPAEEVPPELPEPALGINFARDGMNRRDWLALVAVHSDSWLLSVAFYFGASLNRNDRKRLFSMINDLPTVFEAVTQGKLVKDKPTMDSGSKSKSSTKRSIDGQVRNDLRPRDEGYVEDDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKKGRLN* | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 571431 | 576350 | + | Vvi13g55 | Vvi13g55 | 773841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g55 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 177 | 238 | IPR011011 | - | |
Vvi13g55 | 241 | CDD | PHD_AL_plant | 186 | 236 | IPR044104 | - | |
Vvi13g55 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 236 | IPR019787 | - | |
Vvi13g55 | 241 | Pfam | PHD-finger | 187 | 234 | IPR019787 | - | |
Vvi13g55 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 234 | IPR013083 | - | |
Vvi13g55 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 233 | IPR019786 | - | |
Vvi13g55 | 241 | MobiDBLite | consensus disorder prediction | 142 | 183 | - | - | |
Vvi13g55 | 241 | MobiDBLite | consensus disorder prediction | 158 | 183 | - | - | |
Vvi13g55 | 241 | PANTHER | CPG BINDING PROTEIN | 3 | 239 | IPR045104 | GO:0006355|GO:0042393 | |
Vvi13g55 | 241 | SMART | PHD_3 | 186 | 234 | IPR001965 | - | |
Vvi13g55 | 241 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
Vvi13g55 | 241 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 3 | 239 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13902 | PF12165 | Alfin | 1.60E-67 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g55 | - | - | vvi:100251933 | 496.893 |