Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g55 ATGGCTTCCATCGACTCCAGTCCTCGCACCGTTGAAGACATTTTCAAGGACTACAAAGCTCGACGCAGCGGCGTAGTTCAAGCTCTCACCTTCGATGTCGACGAATTCTACGCGCTATGCGATCCAGAGAAGGAGAATTTGTGTTTGTACGGACATCCGAATGGGTCATGGCATGTGGCTATGCCAGCGGAGGAAGTTCCGCCTGAGCTGCCGGAGCCGGCTTTAGGGATTAATTTTGCAAGAGATGGGATGAACCGGAGAGACTGGCTTGCGTTAGTTGCTGTGCATAGTGATTCTTGGTTGCTTTCTGTGGCATTTTATTTTGGTGCTAGCCTTAACCGTAACGACAGGAAGCGGCTATTTAGCATGATAAACGATCTGCCCACTGTCTTTGAAGCTGTAACCCAAGGAAAACTTGTCAAAGACAAACCCACTATGGATAGTGGAAGCAAATCGAAGAGTAGCACGAAGAGATCAATTGATGGCCAGGTGAGAAATGACCTAAGGCCACGAGATGAGGGCTATGTGGAGGATGACGATGAACACAGTGAAACCCTTTGTGGTAGCTGTGGGGGAAATTACAATGCTGATGAGTTCTGGATCGGCTGTGACATCTGTGAGAGGTGGTTCCATGGAAAGTGCGTGAAGATAACACCAGCCAAGGCTGAAAGTATCAAGCAGTATAAATGCCCTTCTTGCAGCTTGAAGAAGGGCAGGCTGAACTAA 726 48.48 MASIDSSPRTVEDIFKDYKARRSGVVQALTFDVDEFYALCDPEKENLCLYGHPNGSWHVAMPAEEVPPELPEPALGINFARDGMNRRDWLALVAVHSDSWLLSVAFYFGASLNRNDRKRLFSMINDLPTVFEAVTQGKLVKDKPTMDSGSKSKSSTKRSIDGQVRNDLRPRDEGYVEDDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKKGRLN* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 571431 576350 + Vvi13g55 Vvi13g55 773841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g55 241 SUPERFAMILY FYVE/PHD zinc finger 177 238 IPR011011 -
Vvi13g55 241 CDD PHD_AL_plant 186 236 IPR044104 -
Vvi13g55 241 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Vvi13g55 241 Pfam PHD-finger 187 234 IPR019787 -
Vvi13g55 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Vvi13g55 241 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Vvi13g55 241 MobiDBLite consensus disorder prediction 142 183 - -
Vvi13g55 241 MobiDBLite consensus disorder prediction 158 183 - -
Vvi13g55 241 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
Vvi13g55 241 SMART PHD_3 186 234 IPR001965 -
Vvi13g55 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Vvi13g55 241 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g55 - - - vvi:100251933 496.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi8g250 Vvi13g55 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g1243 . 1 250 Alfin-like Transcription Factor Family AT1G14510 76.5 5.1e-109 391.0
Vvi4g139 ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 72.3 8.5e-96 347.1
Vvi11g114 ECH 1 249 Alfin-like Transcription Factor Family AT1G14510 68.5 5.5e-95 344.4
Vvi9g122 ECH 1 258 Alfin-like Transcription Factor Family AT1G14510 66.8 5.5e-95 344.4
Vvi8g250 ECH 8 235 Alfin-like Transcription Factor Family AT1G14510 62.4 3.2e-79 292.0
Vvi13g55 ECH 8 237 Alfin-like Transcription Factor Family AT1G14510 58.0 7.5e-76 280.8
Vvi4g139 ECH 1 254 Alfin-like Transcription Factor Family AT5G26210 78.1 2.9e-112 401.7
Vvi11g114 ECH 1 251 Alfin-like Transcription Factor Family AT5G26210 75.6 6.1e-110 394.0
Vvi9g122 ECH 1 260 Alfin-like Transcription Factor Family AT5G26210 75.4 6.8e-109 390.6
Vvi12g1243 . 10 252 Alfin-like Transcription Factor Family AT5G26210 65.4 5.8e-92 334.3
Vvi8g250 ECH 7 242 Alfin-like Transcription Factor Family AT5G26210 60.6 2.2e-83 305.8
Vvi13g55 ECH 7 239 Alfin-like Transcription Factor Family AT5G26210 58.3 5.6e-79 291.2
Vvi11g114 ECH 1 251 Alfin-like Transcription Factor Family AT3G42790 71.8 3.5e-102 368.2
Vvi9g122 ECH 1 260 Alfin-like Transcription Factor Family AT3G42790 69.8 3.0e-101 365.2
Vvi4g139 ECH 1 254 Alfin-like Transcription Factor Family AT3G42790 72.9 3.9e-101 364.8
Vvi12g1243 . 1 254 Alfin-like Transcription Factor Family AT3G42790 62.6 1.4e-90 329.7
Vvi8g250 ECH 7 240 Alfin-like Transcription Factor Family AT3G42790 61.6 6.3e-83 304.3
Vvi13g55 ECH 7 239 Alfin-like Transcription Factor Family AT3G42790 58.5 2.5e-79 292.4
Vvi8g250 ECH 1 242 Alfin-like Transcription Factor Family AT5G05610 79.8 2.8e-112 401.7
Vvi13g55 ECH 1 239 Alfin-like Transcription Factor Family AT5G05610 72.9 5.6e-105 377.5
Vvi9g122 ECH 8 260 Alfin-like Transcription Factor Family AT5G05610 64.0 2.3e-90 328.9
Vvi11g114 ECH 8 251 Alfin-like Transcription Factor Family AT5G05610 63.7 6.7e-90 327.4
Vvi4g139 ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 63.7 1.9e-89 325.9
Vvi12g1243 . 10 252 Alfin-like Transcription Factor Family AT5G05610 65.0 4.8e-88 321.2
Vvi8g250 ECH 43 242 Alfin-like Transcription Factor Family AT3G11200 77.9 2.1e-88 322.4
Vvi13g55 ECH 29 239 Alfin-like Transcription Factor Family AT3G11200 70.7 1.4e-84 309.7
Vvi4g139 ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 66.5 7.7e-75 277.3
Vvi9g122 ECH 44 260 Alfin-like Transcription Factor Family AT3G11200 63.1 1.3e-74 276.6
Vvi11g114 ECH 44 251 Alfin-like Transcription Factor Family AT3G11200 65.1 5.0e-74 274.6
Vvi12g1243 . 45 252 Alfin-like Transcription Factor Family AT3G11200 64.6 1.4e-73 273.1
Vvi12g1243 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.8 4.9e-75 278.1
Vvi9g122 ECH 1 165 Alfin-like Transcription Factor Family AT2G02470 73.9 2.1e-65 246.1
Vvi11g114 ECH 1 165 Alfin-like Transcription Factor Family AT2G02470 73.9 4.6e-65 245.0
Vvi4g139 ECH 9 158 Alfin-like Transcription Factor Family AT2G02470 78.0 1.1e-63 240.4
Vvi8g250 ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 70.2 1.1e-55 213.8
Vvi13g55 ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 64.9 4.5e-52 201.8
Vvi9g122 ECH 1 166 Alfin-like Transcription Factor Family AT5G20510 79.6 3.3e-76 281.6
Vvi11g114 ECH 1 165 Alfin-like Transcription Factor Family AT5G20510 79.5 4.8e-75 277.7
Vvi4g139 ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 78.8 9.0e-74 273.5
Vvi12g1243 . 1 163 Alfin-like Transcription Factor Family AT5G20510 72.3 6.9e-66 247.3
Vvi8g250 ECH 7 145 Alfin-like Transcription Factor Family AT5G20510 69.2 9.4e-55 210.3
Vvi13g55 ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 64.3 3.0e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13902 PF12165 Alfin 1.60E-67 No_clan Vvi TF