Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g55 ATGGCTTCCATCGACTCCAGTCCTCGCACCGTTGAAGACATTTTCAAGGACTACAAAGCTCGACGCAGCGGCGTAGTTCAAGCTCTCACCTTCGATGTCGACGAATTCTACGCGCTATGCGATCCAGAGAAGGAGAATTTGTGTTTGTACGGACATCCGAATGGGTCATGGCATGTGGCTATGCCAGCGGAGGAAGTTCCGCCTGAGCTGCCGGAGCCGGCTTTAGGGATTAATTTTGCAAGAGATGGGATGAACCGGAGAGACTGGCTTGCGTTAGTTGCTGTGCATAGTGATTCTTGGTTGCTTTCTGTGGCATTTTATTTTGGTGCTAGCCTTAACCGTAACGACAGGAAGCGGCTATTTAGCATGATAAACGATCTGCCCACTGTCTTTGAAGCTGTAACCCAAGGAAAACTTGTCAAAGACAAACCCACTATGGATAGTGGAAGCAAATCGAAGAGTAGCACGAAGAGATCAATTGATGGCCAGGTGAGAAATGACCTAAGGCCACGAGATGAGGGCTATGTGGAGGATGACGATGAACACAGTGAAACCCTTTGTGGTAGCTGTGGGGGAAATTACAATGCTGATGAGTTCTGGATCGGCTGTGACATCTGTGAGAGGTGGTTCCATGGAAAGTGCGTGAAGATAACACCAGCCAAGGCTGAAAGTATCAAGCAGTATAAATGCCCTTCTTGCAGCTTGAAGAAGGGCAGGCTGAACTAA 726 48.48 MASIDSSPRTVEDIFKDYKARRSGVVQALTFDVDEFYALCDPEKENLCLYGHPNGSWHVAMPAEEVPPELPEPALGINFARDGMNRRDWLALVAVHSDSWLLSVAFYFGASLNRNDRKRLFSMINDLPTVFEAVTQGKLVKDKPTMDSGSKSKSSTKRSIDGQVRNDLRPRDEGYVEDDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKKGRLN* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 571431 576350 + Vvi13g55 Vvi13g55 773841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g55 241 SUPERFAMILY FYVE/PHD zinc finger 177 238 IPR011011 -
Vvi13g55 241 CDD PHD_AL_plant 186 236 IPR044104 -
Vvi13g55 241 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Vvi13g55 241 Pfam PHD-finger 187 234 IPR019787 -
Vvi13g55 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Vvi13g55 241 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Vvi13g55 241 MobiDBLite consensus disorder prediction 142 183 - -
Vvi13g55 241 MobiDBLite consensus disorder prediction 158 183 - -
Vvi13g55 241 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
Vvi13g55 241 SMART PHD_3 186 234 IPR001965 -
Vvi13g55 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Vvi13g55 241 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g250 Vvi13g55 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13902 PF12165 Alfin 1.60E-67 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g55 - - vvi:100251933 496.893