Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g558 ATGCTTCGTAACACCCACATTGTCTTTATATGCCTTCTGGGCTGCCTCTGCCCCGTTATAACAGCCACTGATCTCCCCCATCAACACCCCAATCCTGAAGCTGTGGTTCTACAAGTTCAAAGGAGACTGAATGCGTCTCTTGCAAGGAGGGGCTTACTGGGTGTCCATGAAAATGACCAGGTTTCATGTCTCACCGGCAACCCCATCGATGACTGTTGGAGGTGCGACCCCAATTGGGAGGCTGATCGCCAACATCTGGCCGAATGTGGGATTGGGTTCGGTCAGCAAGCAGTTGGTGGCAAAGGTGGTCAAGTCTATGTGGTCACTGACCACTCCGACTCAGGGAATCCGGGTTCGCTCCGATACGCTGTCACCAAACCCGAGCCACTTTGGATTATTTTCTCCAGTGATATGCTGATAAAACTCAAGAGAGAGCTTATAGTAAACAGCTACAAGACTATCGATGGACGAGGCGCAAATGTTCAAATCACGGGCGGTGGCTGCATTGGCCTCAAATACGTTACAAATGTTATCATACACAACATTCAGCTTCATCATTGTGTCCCCTCGGAATCGGACGGTGATGGGATATCCATCATGGGGTCAAGGTACATCTGGATAGACCACTGCTCCCTCTCCTATTGCAAGGATGGCCTGATCGATGCCACATTGGGTTCCACCGCCATCACCCTATCAAACAACTACTTCTCGCATCATGACAAAGTGATGCTCCTGGGTCGAAGCGACGGCGACGAGATGGATGATGGGATGCAAGTGACGGTGGCCTTCAATCGCTTCGGTGAGGCGCTGGAGCAGAGGATGCCAAGGTGCCGGCGGGGGTACTTCCACGTGGTGAATAACGATTACACGCAATGGGGGATTTATGCCATTGGCGGCAGCGCAAGCCCTACTATTAATAGCCAAGGCAACCGTTACACAGCACCACCGTCCACAAATGCCAAGGAGGTGACGAGGCGTATGGATGCAAAAGATGGAGATTGGGCACGTTGGAATTGGAGAACAGAGGGAGACATAATGGTCAACGGCGCATACTTTGTGCCCTCTGGCGATGGTTTGGGTGCTCAGTTTGCTATGGCTTCTAGCGTGGAGCCCAAATCTGCAGGCTTCATTGATCAACTCACCATGAATGCCGGTGCCCTTCCTCCCACCAGTGTAGTTGGAAGCATACCAAATGGTCAAGTACCCAATAGCATACCGAATATTTTGGATTGGTTTTTTAAAAAAAATTAA 1251 50.68 MLRNTHIVFICLLGCLCPVITATDLPHQHPNPEAVVLQVQRRLNASLARRGLLGVHENDQVSCLTGNPIDDCWRCDPNWEADRQHLAECGIGFGQQAVGGKGGQVYVVTDHSDSGNPGSLRYAVTKPEPLWIIFSSDMLIKLKRELIVNSYKTIDGRGANVQITGGGCIGLKYVTNVIIHNIQLHHCVPSESDGDGISIMGSRYIWIDHCSLSYCKDGLIDATLGSTAITLSNNYFSHHDKVMLLGRSDGDEMDDGMQVTVAFNRFGEALEQRMPRCRRGYFHVVNNDYTQWGIYAIGGSASPTINSQGNRYTAPPSTNAKEVTRRMDAKDGDWARWNWRTEGDIMVNGAYFVPSGDGLGAQFAMASSVEPKSAGFIDQLTMNAGALPPTSVVGSIPNGQVPNSIPNILDWFFKKN* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6593308 6603253 + Vvi13g558 Vvi13g558 774344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g558 416 Pfam Pectate lyase 143 310 IPR002022 -
Vvi13g558 416 PANTHER PECTATE LYASE 3 396 - -
Vvi13g558 416 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Vvi13g558 416 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Vvi13g558 416 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Vvi13g558 416 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Vvi13g558 416 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Vvi13g558 416 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Vvi13g558 416 SUPERFAMILY Pectin lyase-like 88 388 IPR011050 -
Vvi13g558 416 Gene3D - 66 388 IPR012334 -
Vvi13g558 416 PANTHER PECTATE LYASE 18-RELATED 3 396 IPR045032 GO:0030570
Vvi13g558 416 SMART amb_all 137 318 IPR002022 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g558 K01728 - vvi:100251231 831.632