Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g559 ATGCTTCCTAATACCTGCATTCTGCTATTATGCCTCCTCTGCTCTCTCTCCCCTCTTATCAGAGCCACTCTCAACCTCAATCTCACTCTCCCCCATCAGCACCCCAACCCTGAAGTTGTTGTTGACGAAGTTCAAAGGAGACTCAATGTATCCATATCGAGAAGACAAGTGCTCTCTGTACAGGAAAACGATGGGTCGTCGTGTCTCACCGGTAACCCCGTTGACGACTGCTGGCGGTGCGACCCCAACTGGCAAAACAACCGGCAGCGCCTCGCCGACTGCGGCATTGGGTTCGGCCTAGACGCTATGGGCGGCAAGGGCGGTCAGTTCTATGTGGTCACCGACTCCTCCGACGAGGACCCCATCAACCCCGCTCCGGGCACTCTCCGGCACGCTGTGATCCAGACTCAACCCCTGTGGATTACCTTCTCCACCAACATGCTCATCAAACTCAAGTACGAGCTCATCGTCAACAGCTTCAAGACCATAGACGGGCGCGGAGCCAATGTGCACATCACCGGCAGGGGCTGCATGACCCTGCAGTACGTGAGCAACGTCATCATCCACGGCGTCCACGTTCACCACTGTGTGCCCTCTGGGAACGCCGACATCCGATCATCCCCCACACACGTGGGATGGCGTGGGAAATCGGACGGCGACGGAATCTCCATATTTGGGTCGAGGAAGATCTGGATCGACCATTGCTCGCTGTCATACTGTAGGGATGGATTGATTGATGCAATAATGGGTTCGACCGGGATCACCATATCGAACAACTACTTCTCCCATCATGACGAGGTGATGCTTTTAGGGCACGACGACAAGTACTCGCCGGACTCCGGGATGCAGGTGACAATAGCCTTCAACCACTTCGGTGAGGGGCTGGTGCAGCGTATGCCTCGCTGCCGGCGTGGCTACATCCACGTGGTCAACAACGACTTCACCCAGTGGGAGATGTATGCCATTGGCGGCAGCGCCAACCCCACCATCAACAGCCAGGGTAATCGCTATACTGCGCCTGGGGACATCAACGCCAAGGAGGTGACAAAGCGCGTGGAGACAGACGAGGAGGATTGGGCAGAATGGAACTGGAGGACAGAAGGGGACGTAATGGTAAATGGAGCTTTCTTTGTGCCATCAGGGGTAGGGCTGAGCACTCAGTACGCCAAGGCTTCCAGTGTGGAGCCCAAGTCCGCCGCTCTCATTCAGCAGCTCACCATGAACGCCGGCGCCCTCAGTGGCTCCAGGGATGACTCCATGGGCGTATCGTATCCGGGGTTCAGCAGTGGGGGGACCAGCAGCAGCATAAGCAACAATGGTGGTCACGGGTCCAGCGATGATCCTGATTACTTTGGGATGATATTCGGGAGTGGGAGCGGGAGCGGCGCACCACCGCCACCCTCAGTTACAATCCCTATGTTTTTTTCTCTTTTAATTATCTTAATTTTGTACGTTACCATCAACCATGGTGGTGTATTATTATTTCTCTAA 1491 55.33 MLPNTCILLLCLLCSLSPLIRATLNLNLTLPHQHPNPEVVVDEVQRRLNVSISRRQVLSVQENDGSSCLTGNPVDDCWRCDPNWQNNRQRLADCGIGFGLDAMGGKGGQFYVVTDSSDEDPINPAPGTLRHAVIQTQPLWITFSTNMLIKLKYELIVNSFKTIDGRGANVHITGRGCMTLQYVSNVIIHGVHVHHCVPSGNADIRSSPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCRDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYSPDSGMQVTIAFNHFGEGLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPGDINAKEVTKRVETDEEDWAEWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIQQLTMNAGALSGSRDDSMGVSYPGFSSGGTSSSISNNGGHGSSDDPDYFGMIFGSGSGSGAPPPPSVTIPMFFSLLIILILYVTINHGGVLLFL* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6603764 6608482 + Vvi13g559 Vvi13g559 774345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g559 496 Gene3D - 71 413 IPR012334 -
Vvi13g559 496 SUPERFAMILY Pectin lyase-like 61 411 IPR011050 -
Vvi13g559 496 Pfam Pectate lyase 154 335 IPR002022 -
Vvi13g559 496 SMART amb_all 146 343 IPR002022 -
Vvi13g559 496 PANTHER PECTATE LYASE 18-RELATED 4 431 IPR045032 GO:0030570
Vvi13g559 496 PANTHER PECTATE LYASE 4 431 - -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Vvi13g559 496 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g559 K01728 - vvi:100246124 959.518