Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g57 ATGACCCGCTTCCAGCCTTCATTACCCGGTCACAGTTGGTCCACACCCTTTGCTATCCAAACCCAAGACCCACGCGCACCCCGGCCACTCCGCCATCTCAACCCTCCACGTCGTTCCTCAACGCTCGGTATCGGGCGTGAAGGAAAAGTCTCACCTTCCTCCCATCTTCTTCGCTCACCTCACCGCCTTTGGAGAAGAAATATAAATTCATGTGAACTCTTCTCCTTGGAATTCAACTTGAGTTTTCTCCATTTTTGTTATCTCTGCCAACTACTACTCTTTGAGGGTTACATGTGCAGTGGTTCAAAGAGTAAACTCTGCCCATTCAATATGGTGATGGAGGGAAAATCTCCAAACCAGGCAGATGGGATTTCCTCTAAATGCTCAGTTTTGCTTGAATTATCAGCTTCTGACGATCTCAAGAGCTTCAGATGCGAAGTAGAAGAGAAGGGCATGGAAGTTGACAAGCCAGGCTTTTGGTATGGAAGGAGACTTGGGTCGAAAAAGATGGGGTTCGAGGAGAGAACTCCTCTTTCAATTGCTGCCATGTTTGGCAGCACCGAGGTGTTGAAGTATATAATCGAAACCGGCAAGGTTGATGTCAACAGGGCTTGCGGTTCGGACCAGGTGACTGCCCTTCACTGCGCTGCCGCGGGTGGGTCGGTCTCTTCCCTTGAGGTTGTCAAGCTCTTGCTTGACGCTTCTGCAGATGCTAATTGTGTTGATTGTAATGGGAATAAGCCTCCATCCACAGCTCCACAGCTATCCAAAGAAGGAAGCGAGAAGAAAGAGTATCCTATCGATATATCGCTGCCGGACATAAACAATGGGATATATGGAACAGATGAGTTCAGGATGTATACTTTCAAGGTGAAGCCTTGCTCCAGGGCTTACTCCCATGACTGGACGGAGTGCCCATTTGTCCATCCAGGGGAGAACGCCAGGAGGAGAGACCCGAAGAAGTTCCCCTACAGCTGTGTTCCCTGCCCGGAGTACCGCAAGGGTTCTTGCCAGAAGGGGGATTCTTGTGAGTATGCTCATGGTGTGTTCGAGTGCTGGCTCCATCCCGCCCAGTACCGAACCCGGCTCTGCAAGGATGAAACTGGGTGTAGTAGGAAAGTTTGTTTCTTCGCCCACAGGCCTGAAGAATTGCGGCCTTTGTATGCTTCCACAGGCTCAGCCATGCCTTCACCAAGGTCTCTTTCAGCTTCTGCAGTGGACATGGCGACACTGAGTCCATTGACCCTTGGTTCATCTGCCTTGCTACTGCCGCCTACTTCCTCCGGTATGTGGCAGAACAAGGTTAACTTCACCCCACCTAGCCTGCAGCTACCGGGTAGCAGGCTGAAGTCTGCTTTGAGTGCTAGAGATTTGGAGTTGGAGTTGGAGCTGCTGGAGCTGGAAAGAATTCAGTAG 1416 50.85 MTRFQPSLPGHSWSTPFAIQTQDPRAPRPLRHLNPPRRSSTLGIGREGKVSPSSHLLRSPHRLWRRNINSCELFSLEFNLSFLHFCYLCQLLLFEGYMCSGSKSKLCPFNMVMEGKSPNQADGISSKCSVLLELSASDDLKSFRCEVEEKGMEVDKPGFWYGRRLGSKKMGFEERTPLSIAAMFGSTEVLKYIIETGKVDVNRACGSDQVTALHCAAAGGSVSSLEVVKLLLDASADANCVDCNGNKPPSTAPQLSKEGSEKKEYPIDISLPDINNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKFPYSCVPCPEYRKGSCQKGDSCEYAHGVFECWLHPAQYRTRLCKDETGCSRKVCFFAHRPEELRPLYASTGSAMPSPRSLSASAVDMATLSPLTLGSSALLLPPTSSGMWQNKVNFTPPSLQLPGSRLKSALSARDLELELELLELERIQ* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 603330 605773 + Vvi13g57 Vvi13g57 773843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g57 471 ProSiteProfiles Ankyrin repeat profile. 208 243 IPR002110 GO:0005515
Vvi13g57 471 PANTHER UNKEMPT FAMILY MEMBER 111 470 IPR045234 -
Vvi13g57 471 ProSiteProfiles Zinc finger C3H1-type profile. 323 350 IPR000571 GO:0046872
Vvi13g57 471 MobiDBLite consensus disorder prediction 1 55 - -
Vvi13g57 471 ProSiteProfiles Ankyrin repeat profile. 173 197 IPR002110 GO:0005515
Vvi13g57 471 ProSiteProfiles Ankyrin repeat region circular profile. 173 197 - -
Vvi13g57 471 SUPERFAMILY Ankyrin repeat 150 250 IPR036770 -
Vvi13g57 471 Gene3D - 168 256 IPR036770 -
Vvi13g57 471 SMART ANK_2a 208 240 IPR002110 GO:0005515
Vvi13g57 471 SMART ANK_2a 173 203 IPR002110 GO:0005515
Vvi13g57 471 MobiDBLite consensus disorder prediction 1 21 - -
Vvi13g57 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 328 348 IPR000571 GO:0046872
Vvi13g57 471 Gene3D - 324 386 - -
Vvi13g57 471 ProSiteProfiles Ankyrin repeat region circular profile. 208 242 - -
Vvi13g57 471 Pfam Ankyrin repeats (3 copies) 171 241 IPR002110 GO:0005515
Vvi13g57 471 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 111 470 - -
Vvi13g57 471 SMART c3hfinal6 323 349 IPR000571 GO:0046872
Vvi13g57 471 SMART c3hfinal6 358 381 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g636 Vvi13g57 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13904 PF13637 Ank_4 2.30E-09 CL0465 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g57 - - vvi:100246707 708.368