Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g57 | ATGACCCGCTTCCAGCCTTCATTACCCGGTCACAGTTGGTCCACACCCTTTGCTATCCAAACCCAAGACCCACGCGCACCCCGGCCACTCCGCCATCTCAACCCTCCACGTCGTTCCTCAACGCTCGGTATCGGGCGTGAAGGAAAAGTCTCACCTTCCTCCCATCTTCTTCGCTCACCTCACCGCCTTTGGAGAAGAAATATAAATTCATGTGAACTCTTCTCCTTGGAATTCAACTTGAGTTTTCTCCATTTTTGTTATCTCTGCCAACTACTACTCTTTGAGGGTTACATGTGCAGTGGTTCAAAGAGTAAACTCTGCCCATTCAATATGGTGATGGAGGGAAAATCTCCAAACCAGGCAGATGGGATTTCCTCTAAATGCTCAGTTTTGCTTGAATTATCAGCTTCTGACGATCTCAAGAGCTTCAGATGCGAAGTAGAAGAGAAGGGCATGGAAGTTGACAAGCCAGGCTTTTGGTATGGAAGGAGACTTGGGTCGAAAAAGATGGGGTTCGAGGAGAGAACTCCTCTTTCAATTGCTGCCATGTTTGGCAGCACCGAGGTGTTGAAGTATATAATCGAAACCGGCAAGGTTGATGTCAACAGGGCTTGCGGTTCGGACCAGGTGACTGCCCTTCACTGCGCTGCCGCGGGTGGGTCGGTCTCTTCCCTTGAGGTTGTCAAGCTCTTGCTTGACGCTTCTGCAGATGCTAATTGTGTTGATTGTAATGGGAATAAGCCTCCATCCACAGCTCCACAGCTATCCAAAGAAGGAAGCGAGAAGAAAGAGTATCCTATCGATATATCGCTGCCGGACATAAACAATGGGATATATGGAACAGATGAGTTCAGGATGTATACTTTCAAGGTGAAGCCTTGCTCCAGGGCTTACTCCCATGACTGGACGGAGTGCCCATTTGTCCATCCAGGGGAGAACGCCAGGAGGAGAGACCCGAAGAAGTTCCCCTACAGCTGTGTTCCCTGCCCGGAGTACCGCAAGGGTTCTTGCCAGAAGGGGGATTCTTGTGAGTATGCTCATGGTGTGTTCGAGTGCTGGCTCCATCCCGCCCAGTACCGAACCCGGCTCTGCAAGGATGAAACTGGGTGTAGTAGGAAAGTTTGTTTCTTCGCCCACAGGCCTGAAGAATTGCGGCCTTTGTATGCTTCCACAGGCTCAGCCATGCCTTCACCAAGGTCTCTTTCAGCTTCTGCAGTGGACATGGCGACACTGAGTCCATTGACCCTTGGTTCATCTGCCTTGCTACTGCCGCCTACTTCCTCCGGTATGTGGCAGAACAAGGTTAACTTCACCCCACCTAGCCTGCAGCTACCGGGTAGCAGGCTGAAGTCTGCTTTGAGTGCTAGAGATTTGGAGTTGGAGTTGGAGCTGCTGGAGCTGGAAAGAATTCAGTAG | 1416 | 50.85 | MTRFQPSLPGHSWSTPFAIQTQDPRAPRPLRHLNPPRRSSTLGIGREGKVSPSSHLLRSPHRLWRRNINSCELFSLEFNLSFLHFCYLCQLLLFEGYMCSGSKSKLCPFNMVMEGKSPNQADGISSKCSVLLELSASDDLKSFRCEVEEKGMEVDKPGFWYGRRLGSKKMGFEERTPLSIAAMFGSTEVLKYIIETGKVDVNRACGSDQVTALHCAAAGGSVSSLEVVKLLLDASADANCVDCNGNKPPSTAPQLSKEGSEKKEYPIDISLPDINNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKFPYSCVPCPEYRKGSCQKGDSCEYAHGVFECWLHPAQYRTRLCKDETGCSRKVCFFAHRPEELRPLYASTGSAMPSPRSLSASAVDMATLSPLTLGSSALLLPPTSSGMWQNKVNFTPPSLQLPGSRLKSALSARDLELELELLELERIQ* | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 603330 | 605773 | + | Vvi13g57 | Vvi13g57 | 773843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g57 | 471 | ProSiteProfiles | Ankyrin repeat profile. | 208 | 243 | IPR002110 | GO:0005515 | |
Vvi13g57 | 471 | PANTHER | UNKEMPT FAMILY MEMBER | 111 | 470 | IPR045234 | - | |
Vvi13g57 | 471 | ProSiteProfiles | Zinc finger C3H1-type profile. | 323 | 350 | IPR000571 | GO:0046872 | |
Vvi13g57 | 471 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Vvi13g57 | 471 | ProSiteProfiles | Ankyrin repeat profile. | 173 | 197 | IPR002110 | GO:0005515 | |
Vvi13g57 | 471 | ProSiteProfiles | Ankyrin repeat region circular profile. | 173 | 197 | - | - | |
Vvi13g57 | 471 | SUPERFAMILY | Ankyrin repeat | 150 | 250 | IPR036770 | - | |
Vvi13g57 | 471 | Gene3D | - | 168 | 256 | IPR036770 | - | |
Vvi13g57 | 471 | SMART | ANK_2a | 208 | 240 | IPR002110 | GO:0005515 | |
Vvi13g57 | 471 | SMART | ANK_2a | 173 | 203 | IPR002110 | GO:0005515 | |
Vvi13g57 | 471 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vvi13g57 | 471 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 328 | 348 | IPR000571 | GO:0046872 | |
Vvi13g57 | 471 | Gene3D | - | 324 | 386 | - | - | |
Vvi13g57 | 471 | ProSiteProfiles | Ankyrin repeat region circular profile. | 208 | 242 | - | - | |
Vvi13g57 | 471 | Pfam | Ankyrin repeats (3 copies) | 171 | 241 | IPR002110 | GO:0005515 | |
Vvi13g57 | 471 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 | 111 | 470 | - | - | |
Vvi13g57 | 471 | SMART | c3hfinal6 | 323 | 349 | IPR000571 | GO:0046872 | |
Vvi13g57 | 471 | SMART | c3hfinal6 | 358 | 381 | IPR000571 | GO:0046872 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13904 | PF13637 | Ank_4 | 2.30E-09 | CL0465 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g57 | - | - | vvi:100246707 | 708.368 |