Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g602 ATGGTGGCACTGCTGAGATCTAAGAGCTTTGCGTTTAGGGCTCCCCAGGAGAATTTTACTATTCAGGATTTCGAATTGGGGAAGATCTACGGCGTCGGGTCCTATTCCAAGGTTGTGAGGGCAAGGAAGAAGGACACTGGAATTGTGTACGCTTTGAAAATCATGGACAAAAAGTTCATCACAAAAGAAAATAAAACAGCTTATGTGAAGTTAGAACGCATTGTGCTTGATCAATTGGATCACCCTGGCATTGTGCGATTATTTTTTACATTTCAAGATACCTTTTCTCTGTATATGGCACTTGAATCATGTGAAGGTGGAGAACTGTTTGATCAAATAACCAGGAAAGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGCCGGAGAACTTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTTGGGAGTGTAAAGCCTATGCAGGATAGTCTAATTACCGTCCTTCCCAATGCAGCATCAGATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGAAACGATCTTTGGGCACTTGGCTGCACTTTGTACCAGATGCTTTCTGGAACTTCTCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCGAGAGATATCCGATTTCCAAATTACTTTTCCGATGAAGCTCGAGATCTCATTGACCGGCTATTGGATACAGAACCCAGCAGAAGACCAGGTGCTGGACGTGATGGTTATGCTTCACTCAAGATGCATCCTTTCTTCAATGGAGTTGACTGGAAGAATTTACGCTCACAAACCCCTCCTAAACTTGCAATGGAAGCGATGGCTCATTCAAGTGAAGGAGATGATGGTCAGGATTCATGGAACCCTGCACACATTGGGGATGGCTCGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAAGAAAATACAAAAACTAACAAACAAGAAGGTGCAGCTTATACTCACCAACAAGCCAAAACTGATCTATGTTGACCCTGCGAAGCTGATGGTAAAGGGAAATATAATCTGGTCTGACAACCCTAATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGGAAAAAGGCAATAGAGGGGCTTCAAAATCGATGA 1407 42.22 MVALLRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRARKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSENEARFYAAEVVDALEYIHSLGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSLITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDIRFPNYFSDEARDLIDRLLDTEPSRRPGAGRDGYASLKMHPFFNGVDWKNLRSQTPPKLAMEAMAHSSEGDDGQDSWNPAHIGDGSARQNDGNSGATSSSEAPGSVTRLASIDSFDSKWQQFLEQGESVLMISMVKKIQKLTNKKVQLILTNKPKLIYVDPAKLMVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDSKQRAWQWKKAIEGLQNR* 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7477627 7487393 + Vvi13g602 Vvi13g602 774388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g602 468 Gene3D Transferase(Phosphotransferase) domain 1 108 305 - -
Vvi13g602 468 Pfam PH domain 365 467 IPR033931 -
Vvi13g602 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vvi13g602 468 ProSiteProfiles Protein kinase domain profile. 24 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g602 468 MobiDBLite consensus disorder prediction 310 353 - -
Vvi13g602 468 SUPERFAMILY PH domain-like 285 467 - -
Vvi13g602 468 SMART serkin_6 24 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g602 468 Gene3D - 334 468 IPR011993 -
Vvi13g602 468 Pfam Protein kinase domain 26 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g602 468 MobiDBLite consensus disorder prediction 335 353 - -
Vvi13g602 468 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 6 464 - -
Vvi13g602 468 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 464 - -
Vvi13g602 468 SUPERFAMILY Protein kinase-like (PK-like) 11 310 IPR011009 -
Vvi13g602 468 CDD STKc_PDK1 22 291 IPR039046 GO:0004674
Vvi13g602 468 Gene3D Phosphorylase Kinase; domain 1 22 107 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76171 PF00069 Pkinase 1.90E-64 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g602 K06276 - vvi:100264394 933.71