Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g611 ATGGCTTCAATCCTTGAGCCATCGAAACGCAGTTTTTTTCCTGCAATGACGAAGATTGTGGGCACGCTGGGCCCAAGATCGAGATCAGTGGGCGTTATATCTGGCTGTATCACGGCTGGAATGTGTGTGGCACGGTTTGATTTTTCATGGGGTGATGCTGAATTTCATCAAGAGACAGTGGAAAATCTGAAGGTGGCAGTGAAGAGTACCAAGAAGCTCTGTGCGGTGATGCTGGATACCGTGGGTCCAGAGTTGCAAGTTCTCAATAGAAGTGAGCACCCCATTTCTCTTCAAGTAGACTCTTTGGTTGTGCTAACACCAAATCAGGACAAAGAAGCCACTTCAAACTTGCTGCCCTTAAATTTTGGTGGATTATCAAAGGCAGTGAAGAAAGGAGACACTATTTTTATAGGCCAGTATCTGTTTACAGGAAGTGAAACTACTTCTGTGTGGCTGGAGGTGACTGAGGTGGATGGGGAAGATGTGGTTTGCCTTATAAAGAATTCTGCTACCTTGGCAGGATCCTTGTACACATTGCATGTCTCTCAAATTCGTATTGATCTTCCCACACTCACTGATAAAGATAAGGAAGTTATAAGCACATGGGGTGTTCAAAACAAAATAGATTTCCTGTCATTGTCTTATACCCGCCATGCGGAAGATGTTCGCCATGCTCGCGAGTTTCTTTCTAAACTGGGTGATCTCAATCAAACTCAGATTTTTGCAAAGATTGAAAATATAGAGGGCTTGAACCATTTTGATGAGATTCTACAAGAAGCAGATGGCATTATCCTCTCTCGTGGAAATCTGGGGATTGATCTCCCACCAGAGAAGGTATTTTTATTTCAAAAGGCTGCTGTCTATAAGTGCAATATGGCTGGAAAGCCTGCGGTGATTACTCGTGTTGTGGACAGTATGACTGACAATCTGAGACCTACTCGTGCTGAAGCGACTGATGTTGCTAATGCTGTACTGGATGGTAGTGATGCAATTCTTCTAGGTGCAGAAACCCTGCGGGGATTGTACCCTGTTGAGACAATTTCCACTGTTAATAAAATTTGTGCTGAGGCTGAGAAAGTTTTCAATCAGGATTTCTATTTTAAGAAGGCTGTCAAACATGTTGGAGAACCGATGACCCACTTGGAATCTATTGCTTCCTCTGCGGTACGTGCAGCCATCAGCGTGAAGGCATCTGTCATTGTTTGCTTCACTTCAACCGGGAAAGCTGCAAGATTGATTGGAAAGTATAGGCCAACAATGCCAGTGATATCTGTTGTCATCCCTCGGCTCAAGACAAATCAACTCCGCTGGACTTTTAGTGGTGCATTTGAGGCAAGACAATCAGTCATAGTGAGGGGCATTTTCCCCATGCTGGCAGATCCTCGACATCCGGCGGAATCAACAAATGCGACAAATGAGTCAATTCTGAAGGTTGCTTTGGATCATGGGAAAGCATTTGGTGTCATAAAATCTCATGACCGAATTGTTGTTTGCCAGAAAGTCGGCGATGCATCTGTGGTGAAGATCATTGAGCTTGAAGATTAG 1545 44.27 MASILEPSKRSFFPAMTKIVGTLGPRSRSVGVISGCITAGMCVARFDFSWGDAEFHQETVENLKVAVKSTKKLCAVMLDTVGPELQVLNRSEHPISLQVDSLVVLTPNQDKEATSNLLPLNFGGLSKAVKKGDTIFIGQYLFTGSETTSVWLEVTEVDGEDVVCLIKNSATLAGSLYTLHVSQIRIDLPTLTDKDKEVISTWGVQNKIDFLSLSYTRHAEDVRHAREFLSKLGDLNQTQIFAKIENIEGLNHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAAVYKCNMAGKPAVITRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVNKICAEAEKVFNQDFYFKKAVKHVGEPMTHLESIASSAVRAAISVKASVIVCFTSTGKAARLIGKYRPTMPVISVVIPRLKTNQLRWTFSGAFEARQSVIVRGIFPMLADPRHPAESTNATNESILKVALDHGKAFGVIKSHDRIVVCQKVGDASVVKIIELED* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7599221 7624536 - Vvi13g611 Vvi13g611 774397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g611 514 Pfam Pyruvate kinase, barrel domain 17 362 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 6 362 IPR015813 GO:0003824
Vvi13g611 514 TIGRFAM pyruv_kin: pyruvate kinase 17 503 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PANTHER PYRUVATE KINASE 1 514 - -
Vvi13g611 514 Pfam Pyruvate kinase, alpha/beta domain 382 509 IPR015795 -
Vvi13g611 514 SUPERFAMILY PK C-terminal domain-like 345 507 IPR036918 -
Vvi13g611 514 SUPERFAMILY PK beta-barrel domain-like 83 173 IPR011037 -
Vvi13g611 514 Gene3D - 83 189 IPR015806 GO:0004743|GO:0006096
Vvi13g611 514 Gene3D - 358 500 IPR036918 -
Vvi13g611 514 Gene3D - 17 357 IPR040442 -
Vvi13g611 514 PRINTS Pyruvate kinase family signature 72 88 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PRINTS Pyruvate kinase family signature 208 222 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PRINTS Pyruvate kinase family signature 240 266 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PRINTS Pyruvate kinase family signature 267 291 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PRINTS Pyruvate kinase family signature 316 334 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PRINTS Pyruvate kinase family signature 335 351 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi13g611 514 PANTHER PYRUVATE KINASE 1 514 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1064 Vvi13g611 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g611 K00873 - vvi:100247244 989.949