Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g612 ATGCTAGGTATTGTATGGCGTTGGACCCATATTACATATAATTTGAGATTGTACGACATTGGACCCATTTGCAAGTTCCTCACCCAGAACCTAGACGATGGGTCAATTGGTCTTTTGTTTCTATTGCACCACGACAAGGTCTTCATGGAAAGTCGGTACCACTTGAATGATGCTATACTGGAAGAAGGAATTACCTTCAATCGGGCATACGGAATGACATCATTTGAATACCTAAGAACAAATCAAAGATTCAAGAGGGTGTTCAATGAAGCAATGTCAAATCATACTACGTTGATAATGAAAAGGATACTCCAGATTTACAAAGGGTTTGAAGGCCTTAAAGTGTTGGTTGATGTGGGAGGTGGTATTGGGGTCACTGTTAGAATCATCACTTCTAAGTTTCCTCATATTAAGGGCATCAATTATGATATGTCTCATGTTTTAATGGACGTCTCTCTTATCCTATTATTGAATGTTAGGTGCCTTACTCGGGCGACATAG 501 39.52 MLGIVWRWTHITYNLRLYDIGPICKFLTQNLDDGSIGLLFLLHHDKVFMESRYHLNDAILEEGITFNRAYGMTSFEYLRTNQRFKRVFNEAMSNHTTLIMKRILQIYKGFEGLKVLVDVGGGIGVTVRIITSKFPHIKGINYDMSHVLMDVSLILLLNVRCLTRAT* 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7658583 7659542 - Vvi13g612 Vvi13g612 774398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g612 166 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE-LIKE ISOFORM X1 15 153 - -
Vvi13g612 166 Pfam O-methyltransferase domain 53 150 IPR001077 GO:0008171
Vvi13g612 166 PANTHER O-METHYLTRANSFERASE 15 153 IPR016461 GO:0008168
Vvi13g612 166 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 166 IPR016461 GO:0008168
Vvi13g612 166 Gene3D Vaccinia Virus protein VP39 28 156 IPR029063 -
Vvi13g612 166 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 34 148 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g612 K13066 - vvi:100265976 209.92