Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g616 ATGGCCTCCTCGAGGCCACGCGCTCGATCCACCTCTCTTCGCGATTCTGACGCTCCTATGGAGGGTGCTTCTGGCTGGGACGCCATCGAATGGACCAAGATTGAGCCGTTTTCGAGGTCGGTTTCTCTTGGGAATTTGGAATGCTTGCTTGAGGCGGAGCAGATTGTTGCTGAGGGACAAGGGGTTGTTCTGGTTAATACTGATGAGGCAGGTACCCTGTTGGTGACCAATTTTCGTCTTTTTTTTCTGCGCGAGGGAACTAGAGATATCATTCCACTTGGCACGATACCACTGGCAACAATTGAGAAGTTCAGCAAAATAGTTGTGAAACCACCTTCAGCCCCTCGTCAATTTGATAAGGCTCCATCACAAAGACTTCTCCAGGTCATTGGCAAAGATATGAGAATTATTGTCTTTGGGTTTCGCCCTCGAACAAAGCAGAGACGGACAATATTTGATGCATTATTGAGGTGTACAAGGCCTACAAGATTATGGGATCTTTATGCTTTTGCTTCTGGACCTTTCAAATTCACGAACACCAATCCAATGGTACGGTTACTAGATGAGTATTTTCGGCTTCTTGGAAAAGGCTCCTGTCATGCATCAATGGATACGATTGAAGATGGGTCATTCACGTTGTCTAATGATTTGTGGAGAATAAGTGGAATAAATTCCAACTATACATTGTGCCCTACTTACCCCTTCGCCTTGATTGTTCCAAGATCCATTGGTGATGAAGAAATTCTCCAGGCTTCCAGCTTTCGTGCAAAATGCCGATTGCCTGTAGTTTCATGGTGTCATCCAGTAACTGGAGCAGTTCTTGCACGCTCATCTCAGCCCCTAGTTGGTCTCATGATGAATATGAGGAGCAATACAGATGAAAAGATTGTTGCAGCACTTTGCACTCAACTTGCAGGTGCAAGGGAGACACGGAGGAAGCTATATATCGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAACGGAGCAATGGGAGGTGGCTCAGAGTCCTCTTCTCATTATTTTCAGTCTGAGATAGTTTTCTTTGGGATAGACAATATACATGCAATGAGGGAGAGTTTTGCTCGGCTCAGGGACTACTTAGACACTTATGGCACTGCTTCATCAGATGGAATGTCTTCATTCTTGAGACATGGTGGATGGAGTTGGGGCGGAGGCAACCTCAGCAGTATGTCTGCTTCGGTATCAACGCTTGGAGACAGTGGTTGGTTAATACATGTTCAAAGTGTCTTGGCTGGTTCTGCTTGGATTGCTGCACGTGTTGAATTGGAATCAGCTTCAGTGCTTGTCCATTGCAGTGATGGATGGGATAGAACAACTCAGTTAGTCTCACTTGCCAATTTGATGCTTGATCCATACTATCGGACATTTAAAGGGTTCCAGGCACTTGTTGAAAAAGACTGGCTTGCATTTGGTCATCCATTTTCAGATCGCATGGGGATGCCAACTGTATCTGGAAGTGTTAACATGCCCTTTGAATTATCCAGGCAGCCATCAAGTGGGAGTTTCTCATCATCACCCATGCGCCAGCCATCTGGATCACTCGCATCTCAAGCTCCTCCTTCACATGCACAAACTTCTAACAACTACTCTCCCATATTCTTGCAGTGGGTCGATTGTGTATCACAACTGTTGCGGATGTATCCTTTTGCTTTTGAGTTCTCCTCGGCTTTCCTAGTGGATTTCTTGGACTGTGTGCTTTCCTGCCGCTTTGGGAATTTTTTGTGTAATAGTGAAAAGGAAAGGCTGCAATGTGGTGTTTCCGACGCTTGTGGATGCATGTGGAAGTATTTGGCTGATTTGCGTGCTTCTGAGGGAAAGTATCATGTTCACTATAACCTCTTTTTTGATCCAAATAGACATGGAAGTGCAATATTACCTCCTGCGGCAGCTCTAGCACCAACTCTGTGGCCCCAATTTCATCTTCGGTGGGCTTGTCCTTCTGAGGATCAAGCTGGGGAACTTGAAGCCGAGTGCAGGAAAATGGCCGAGAAGTTCTCTGAACTGAAAAAGGAAAAAGAGGTGGCAGAAAGGAAAGCTAAAGAAATCACTACTACCATTGAGTCACTATCAGCAGAGTTAAGAAAGGAGAAGCAACTCAGTAGCTCAGCCATGAACTTGGCCAAGAGGGCCAGCAAGGAAAGTGCAGCCATAAAGCGAGCAGTTGAGTCATTGGGATGCAAGGTTCACTTTTCAGACAGTGGATATTTGGTCGACATTGAAAGGAATCCACAGAAGATGCTATTTGTAGCAATCCACTTAGTCGGGTGTGTGAAACTCTATGCCCATTGCACACCCGAGAGGGAGGATGCAGGTGGCCAGATGCTGGTTGTGCACAGTTTGGAAGCCAGTTTGTGGGTCTGA 2385 45.95 MASSRPRARSTSLRDSDAPMEGASGWDAIEWTKIEPFSRSVSLGNLECLLEAEQIVAEGQGVVLVNTDEAGTLLVTNFRLFFLREGTRDIIPLGTIPLATIEKFSKIVVKPPSAPRQFDKAPSQRLLQVIGKDMRIIVFGFRPRTKQRRTIFDALLRCTRPTRLWDLYAFASGPFKFTNTNPMVRLLDEYFRLLGKGSCHASMDTIEDGSFTLSNDLWRISGINSNYTLCPTYPFALIVPRSIGDEEILQASSFRAKCRLPVVSWCHPVTGAVLARSSQPLVGLMMNMRSNTDEKIVAALCTQLAGARETRRKLYIADARPRKNALANGAMGGGSESSSHYFQSEIVFFGIDNIHAMRESFARLRDYLDTYGTASSDGMSSFLRHGGWSWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVELESASVLVHCSDGWDRTTQLVSLANLMLDPYYRTFKGFQALVEKDWLAFGHPFSDRMGMPTVSGSVNMPFELSRQPSSGSFSSSPMRQPSGSLASQAPPSHAQTSNNYSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDFLDCVLSCRFGNFLCNSEKERLQCGVSDACGCMWKYLADLRASEGKYHVHYNLFFDPNRHGSAILPPAAALAPTLWPQFHLRWACPSEDQAGELEAECRKMAEKFSELKKEKEVAERKAKEITTTIESLSAELRKEKQLSSSAMNLAKRASKESAAIKRAVESLGCKVHFSDSGYLVDIERNPQKMLFVAIHLVGCVKLYAHCTPEREDAGGQMLVVHSLEASLWV* 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7760024 7809938 + Vvi13g616 Vvi13g616 774402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g616 794 Gene3D - 59 159 IPR011993 -
Vvi13g616 794 MobiDBLite consensus disorder prediction 503 532 - -
Vvi13g616 794 ProSiteProfiles Myotubularin phosphatase domain. 195 648 IPR010569 -
Vvi13g616 794 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 17 751 - -
Vvi13g616 794 CDD PTP-MTM-like 258 550 - -
Vvi13g616 794 ProSitePatterns Tyrosine specific protein phosphatases active site. 437 447 IPR016130 GO:0016311|GO:0016791
Vvi13g616 794 SUPERFAMILY PH domain-like 48 171 - -
Vvi13g616 794 MobiDBLite consensus disorder prediction 1 21 - -
Vvi13g616 794 Coils Coil 659 707 - -
Vvi13g616 794 Pfam Myotubularin-like phosphatase domain 168 589 IPR010569 -
Vvi13g616 794 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 212 652 IPR029021 -
Vvi13g616 794 PANTHER MYOTUBULARIN-RELATED 17 751 IPR030564 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g616 K18081 - vvi:100252361 1473.37