Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g628 ATGGAACCTCATAATAGGCATGTACAGGAACAGATTCACTCCACCTCCAACCGCCAGCTCGCTTATGGAAGGGAACACTGGTCCAGCCCCAAAGACACGACGTGCTCCAAGAGCTGGGCTCAGCAGACCGAGGAGAGCTACCAATTGCAGCTCGCTCTCGCACTTCGCCTCTCCTCCGATTCTTCTTCTGCCGCCGATCCTTATTTCTTGGATTCTGCTACCGGTGATCGCCCAATTGGGTCTGCCAGGGACCTCTCTCATCGGTTCTGGGTCAATGGCTGCCTGTCTTACATTGATAGGGTTCCAGATGGATTTTACCTGATACATGGGATGGACCCATATGTATGGACTATAAGCACTGATTTGAAAGAGACTGGTCGGATCCCATCTTTTGAATCATTGAAAGCTGTTGATCCTCGTGATGATTTCTCAATTGAAGTGGTTTTGGTTGATAAACATCGGGATCCTTCTTTAAAGGAGCTACAGAATAGGGCACTAAGTCATTCTAGTAGTTGGATTAAGGCAAAACAAGTGGTTGATGAGCTTGCAAACCTTGTCTGTAATCACATGGGGGGTGCAGCTTCTTCTGGAGAAGATGGTTTTGCCAACCACTGGAAGGAGTTTTCTGGCATGTTGAAGAACAGCCTTGGCTCTGTTGTACTTCCAATTGGAAGCTTATCTGTTGGCCTGTGTGTTCATCGTGCACTTCTATTTAAAGTGCTAGCAGATGTAGTCAACTTACCATGCCGGATTGCAAAGGGTTGCAAATATTGTAGAAGCAATGTTGCTTCCTCCTGCCTTGTGCGATTTGGCCCTGAAAGGGAGTATTTGGTTGATTTGATGTGTAATCCGGGTGCTCTGTGCTCACCTGATTCCTTGCTCAATGGTACATCTTCCATCTTAGTTTCTTCGCCCTTATGCCATCCAAGATTTAAATTGGTTGAAACGGCTGAGGACTTCAGGATATTGGCCAGACTGTATTTCTTTGACTGTCAATCACTTAATATTGCATTTGATGATCCTTCCTCAGGTGCTGCTGTTGGACAAGATGATAACTCAGATTCACGGTTCCCTAAACCTTTTGATAGGAGTTACACTGAGAGCAAGAACCTGGTATCAACTTCAAATAACCACCATGAACTTTTTCTGCCCCAAAGGACTGCACGACTTGTATCCCATGATAGAGATCCCCAGATGCAAAACTCGTTCAATCCTTTGCCAAATGTCATAAACTCAAAACACTTGGTCAAAGGTGCAGTTCGACCAAGTCACATCCTACCAATGGGTAATAGAGATGTTCAACCTATTTTGCCCTTTCCTAGGCCAAGGCCTGGTACAAATAAGAATCTGGGGTTCATGGAAAAGAATCACTCAGTAACAAGTAGATCAAGTCTAAAATATTCTCTTGTAGAGGAGGATCTGGAGATTCCGTGGAGTGAACTTGTTTTGAAGGAGAACATTGGAGCAGGTTCGTTTGGAACTGTTCATCGTGCTAAGTGGCGTGATTCAGATGTTGCTGTCAAGATTCTCATGGAGCAAGATTTCCATGCAGAGCGCTTCGAGGAATTTCTAAGAGAGGTTGCAATCATGAAACGCTTGAGGCATCCAAACATTGTTCTCTTTATGGGTGCTGTTACTCAGCCTCCACATCTGTCCATAGTTACAGAATACTTATCAAGAGGCAGCTTATATAAACTCTTGCGCATGCCTGATGCAGGCATGGTACTGGATGAGAGGCGTCGTTTAAATATGGCTTATGATGTGGCAATGGGGATGAATTATCTTCATCAACTCAAACCTCCTATTGTTCATCGAGATTTGAAGTCTCCAAATCTTTTGGTGGATGGTAATTATACGGTAAAGGTTTGTGATTTTGGTCTTTCCCGTTCAAAGGCAAACACATTTCTTTCATCTAAAACGGCCGCAGGGACACCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAAAAGTCAGATGTTTACAGCTTTGGTGTAATCTTGTGGGAACTTGTGACCTTGCAAAGGCCTTGGAAACATTTAAATCCAGCTCAGGTTGTAGCAGCTGTTGCTTTCAAGGGAAAAAGGCTTGAGATTCCAGCTGAAGTAAATCATCAAGTCGCCTACTTGATTGAGGCCTGCTGGGCTAATGAGCCCTCGAAGCGTCCTCCTTTCTCCTTTATCAAGGAATACTTGCAGCCACTGATCTCATCCTCACCTCAACCATTTCAAGGGTCACATTCCAGAAATTACCCGAAGGGTGGTTAA 2277 44.75 MEPHNRHVQEQIHSTSNRQLAYGREHWSSPKDTTCSKSWAQQTEESYQLQLALALRLSSDSSSAADPYFLDSATGDRPIGSARDLSHRFWVNGCLSYIDRVPDGFYLIHGMDPYVWTISTDLKETGRIPSFESLKAVDPRDDFSIEVVLVDKHRDPSLKELQNRALSHSSSWIKAKQVVDELANLVCNHMGGAASSGEDGFANHWKEFSGMLKNSLGSVVLPIGSLSVGLCVHRALLFKVLADVVNLPCRIAKGCKYCRSNVASSCLVRFGPEREYLVDLMCNPGALCSPDSLLNGTSSILVSSPLCHPRFKLVETAEDFRILARLYFFDCQSLNIAFDDPSSGAAVGQDDNSDSRFPKPFDRSYTESKNLVSTSNNHHELFLPQRTARLVSHDRDPQMQNSFNPLPNVINSKHLVKGAVRPSHILPMGNRDVQPILPFPRPRPGTNKNLGFMEKNHSVTSRSSLKYSLVEEDLEIPWSELVLKENIGAGSFGTVHRAKWRDSDVAVKILMEQDFHAERFEEFLREVAIMKRLRHPNIVLFMGAVTQPPHLSIVTEYLSRGSLYKLLRMPDAGMVLDERRRLNMAYDVAMGMNYLHQLKPPIVHRDLKSPNLLVDGNYTVKVCDFGLSRSKANTFLSSKTAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELVTLQRPWKHLNPAQVVAAVAFKGKRLEIPAEVNHQVAYLIEACWANEPSKRPPFSFIKEYLQPLISSSPQPFQGSHSRNYPKGG* 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8150738 8202754 - Vvi13g628 Vvi13g628 774414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g628 758 ProSiteProfiles Protein kinase domain profile. 481 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g628 758 PRINTS Tyrosine kinase catalytic domain signature 555 568 IPR001245 GO:0004672|GO:0006468
Vvi13g628 758 PRINTS Tyrosine kinase catalytic domain signature 596 614 IPR001245 GO:0004672|GO:0006468
Vvi13g628 758 PRINTS Tyrosine kinase catalytic domain signature 643 653 IPR001245 GO:0004672|GO:0006468
Vvi13g628 758 PRINTS Tyrosine kinase catalytic domain signature 662 684 IPR001245 GO:0004672|GO:0006468
Vvi13g628 758 PRINTS Tyrosine kinase catalytic domain signature 706 728 IPR001245 GO:0004672|GO:0006468
Vvi13g628 758 SMART serkin_6 481 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g628 758 Pfam Protein tyrosine and serine/threonine kinase 482 735 IPR001245 GO:0004672|GO:0006468
Vvi13g628 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Vvi13g628 758 ProSitePatterns Protein kinases ATP-binding region signature. 487 508 IPR017441 GO:0005524
Vvi13g628 758 Gene3D Phosphorylase Kinase; domain 1 474 559 - -
Vvi13g628 758 CDD STKc_MAP3K-like 487 735 - -
Vvi13g628 758 Gene3D Transferase(Phosphotransferase) domain 1 560 746 - -
Vvi13g628 758 SUPERFAMILY Protein kinase-like (PK-like) 457 735 IPR011009 -
Vvi13g628 758 Pfam Ethylene-responsive protein kinase Le-CTR1 82 288 - -
Vvi13g628 758 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 748 - -
Vvi13g628 758 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 28 748 - -
Vvi13g628 758 MobiDBLite consensus disorder prediction 1 39 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76172 PF07714 PK_Tyr_Ser-Thr 1.30E-69 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g628 K14510 - vvi:100264370 1526.53