Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g633 | ATGGAGCGAGAGTCACCATTGGAAAGAAGATATAATGATAAAGGGAATGGTGTATTTGGTTTTAAGCCATGGCAGAGGATTCGCGTTGGGAATGTGGTGAAAGTGGAGAAAGATCAATTTTTTTTTCCTGCAGATTTGCTTTTGTTGTCGTCGAGTTATGATGATGGGATTTGCTATGTGGAGACCATGAACCTGGATGGCGAGACAAACTTGAAGGTAAAGAGGTTTTTGGAGGTTACTTTGCCATTGGACGATGATGGGACTTTCAATGATTTCAGAGCAACGATAAAATGTGAAGATCCTAACCCGAGCCTCTACACCTTTGTTGGCAATTTTGAGTATGAGCGTCAGGTTTATCCTCTTGATCCTAGTCAGATCCTCCTCAGAGATTCAAAGCTTAGGAACACGGCTTTTGTGTATGGAGTGGTGATATTTACCGGTCATGATAGCAAAGTCATGCAGAATGCAACACAGTCCCCTTCAAAAAGGAGCAGAATAGAAGGAAAAATGGATCAAATCATTTACATTCTTTTCACCCTCCTTGTGGTGATCTCATTGATCAGCTCTATTGGATTTGCCGTAAAGACAAAGTACCAAATGCCCGACTGGTGGTACTTACAGCCCAATAATACCACAAACCTTTATAATCCCAAGAAGCCAGCATTGTCAGGAATTTTCCATCTTGTCACTGCTCTTATACTTTATGGGTATTTAATACCCATCTCACTCTATGTTTCAATTGAAGTTGTGAAGGTCCTGCAAGCAACATTCATTAACCAGGACATACACATGTATGATGAGGAAACTGGGAATACTGCCCAAGCACGGACATCAAATTTGAATGAGGAGCTAGGCCAGGTTGACACAATCCTTTCTGATAAAACTGGCACTCTGACATGCAATCGGATGGATTTTCTCAAGTGTTCGATTGCTGGTTCTACATATGGTTCTGGTTCTAGTGAAGTTGAACTTGCTGCTGCAAAGCAGATGGCTATTGACCTTGAGGAGCAGGGAAATGAACTTTCCAAAATTTTCCCATGCATAAAAACAGTACTGGAACATAAACATGTGATCAAAGGGTTTAGCTTCGAGGACATCCGTCTCATGGGAGGAAATTGGTCAAAAGAGCCCAATGCAGATGTCATTGAATTATTTCTTCAGATACTTGCAGTTTGTCATACTGCAATTCCTGAGCGAAATGAAGAGATTGGGGGCTTTAATTATGAAGCAGAGTCACCAGATGAAGGAAGTTTTCTTGTTGCAGCTCGAGAATTTGGTTTTGAGTTTTGTAAAAGAACGCACACAAGTGTACATGTTCGTGAAAGATATGTTTCTTCTGGACAACCAGTCGAAAGGGAATACCAAATTCTCAATCTGTTGGAGTTCACTAGCAAAAGAAAGCGAATGTCCGTGATTGTGCGGGATGAGGATGGGCAGATTTTTCTCCTTTGCAAGGGTGCAGACAGCATCATCTTTGATCGTTTGGCAAAGAATGGAAGGATATATGAGGAAGCTACTACTAGGCATCTGAATGAATATTCTCTACAGGACCTTTTGGGAGTGGCATCAAATGCCTCAGTGGACAGCAGCAGTGTTCAGTTTGGATTGACTTCTCTCCAGAACTTACTGACAAGCAGCCTAAATTTGGCATCCATATTTTCTACTAAAGTACAACCGTTGCCTCTTTATGAGTGCTTCTCTGTGTCTTTTGCTTCAAAAAGTAACATTCTCCAACTTTACTTCTGA | 1746 | 41.35 | MERESPLERRYNDKGNGVFGFKPWQRIRVGNVVKVEKDQFFFPADLLLLSSSYDDGICYVETMNLDGETNLKVKRFLEVTLPLDDDGTFNDFRATIKCEDPNPSLYTFVGNFEYERQVYPLDPSQILLRDSKLRNTAFVYGVVIFTGHDSKVMQNATQSPSKRSRIEGKMDQIIYILFTLLVVISLISSIGFAVKTKYQMPDWWYLQPNNTTNLYNPKKPALSGIFHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIHMYDEETGNTAQARTSNLNEELGQVDTILSDKTGTLTCNRMDFLKCSIAGSTYGSGSSEVELAAAKQMAIDLEEQGNELSKIFPCIKTVLEHKHVIKGFSFEDIRLMGGNWSKEPNADVIELFLQILAVCHTAIPERNEEIGGFNYEAESPDEGSFLVAAREFGFEFCKRTHTSVHVRERYVSSGQPVEREYQILNLLEFTSKRKRMSVIVRDEDGQIFLLCKGADSIIFDRLAKNGRIYEEATTRHLNEYSLQDLLGVASNASVDSSSVQFGLTSLQNLLTSSLNLASIFSTKVQPLPLYECFSVSFASKSNILQLYF* | 582 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 8324471 | 8327622 | - | Vvi13g633 | Vvi13g633 | 774419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g633 | 581 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 293 | 299 | IPR018303 | - | |
| Vvi13g633 | 581 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 14 | 521 | - | - | |
| Vvi13g633 | 581 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 19 | 516 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 | |
| Vvi13g633 | 581 | PANTHER | P-TYPE ATPASE, SUBFAMILY IV, HAD-LIKE DOMAIN PROTEIN-RELATED | 14 | 521 | - | - | |
| Vvi13g633 | 581 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 157 | 563 | IPR023298 | - | |
| Vvi13g633 | 581 | Gene3D | - | 16 | 158 | - | - | |
| Vvi13g633 | 581 | Pfam | Cation transport ATPase (P-type) | 391 | 495 | - | - | |
| Vvi13g633 | 581 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 298 | 494 | IPR023299 | GO:0000166 | |
| Vvi13g633 | 581 | Gene3D | - | 295 | 529 | IPR023299 | GO:0000166 | |
| Vvi13g633 | 581 | SUPERFAMILY | Calcium ATPase, transduction domain A | 15 | 156 | IPR008250 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g633 | K01530 | - | vvi:100249823 | 939.873 |