Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g657 ATGTTGGATCATCCATTTTTGCCCACGCTTTATGCCACGCTGGACTCTCCACGGTGGTCCTGTCTGTTGACGGAGTTCTGTCCCGGCGGCGACCTCCACGTCCTCCGGCAGCGTCAGCCTGATAAGCGCTTTCACGAAGCTACTGTCCGATTCTACGCATCGGAAGTGATCGTGGCTCTAGAATACCTTCACATGATGGGGATAATCTACCGTGACCTAAAACCCGAAAACGTGCTCGTGAGATCGGACGGTCATATTATGCTCACAGACTTCGATCTCTCATTAAAAAACGATAATTCTACATCAACGGCCCAGATCGTCTCGGATCAAAACCCGGCAAAGAAGCCACGTCACAGGAGGGCCCTGGAGATCGTGGCGGAGCCGGTGGACGTGCGGTCAATGTCGTTCGTTGGGACGCACGAGTACCTGGCCCCAGAGATCGTATCGGGGGAAGGGCACGGGAACGCGGTGGATTGGTGGACGCTAGGCATTTTCATATTCGAAATGCTGTACGGGACGACGCCGTTTAAGGGCGTGGACAATGAACTGACCCTGGCTAACATCGTGGCCCGAGCGCTGGAGTTCCCGAAGGAGCCATGGGTGCCAGCGGCAGCCAAGGATCTGATCACACAGCTGTTGGTAAAGGAGCCCAGCAGGCGAATGGGAGCCACCATGGGCGCCACCGCCATCAAACACCATGCCTTCTTCAACGGGGTGAACTGGGCGCTGCTGAGATGCGTTAGTCCACCCATCGTTCCCCGACCCTGCAACGACGTAGTTTCACCCCAAGGTTTTAGAACCAACCAACCAACCACATTCATTGGTCCCCAACATATACGTATGCATCTCAAATTGTGTAAACCAAAATTTCATATGAAAAAAATGCTTTCGATTATTATTACCATTAACAGTTAG 915 53.11 MLDHPFLPTLYATLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHEATVRFYASEVIVALEYLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKNDNSTSTAQIVSDQNPAKKPRHRRALEIVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGNAVDWWTLGIFIFEMLYGTTPFKGVDNELTLANIVARALEFPKEPWVPAAAKDLITQLLVKEPSRRMGATMGATAIKHHAFFNGVNWALLRCVSPPIVPRPCNDVVSPQGFRTNQPTTFIGPQHIRMHLKLCKPKFHMKKMLSIIITINS* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9032831 9035020 + Vvi13g657 Vvi13g657 774443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g657 304 PANTHER FLIPPASE KINASE 1-RELATED 1 113 - -
Vvi13g657 304 PANTHER FLIPPASE KINASE 1-RELATED 114 259 - -
Vvi13g657 304 SUPERFAMILY Protein kinase-like (PK-like) 2 269 IPR011009 -
Vvi13g657 304 PANTHER PROTEIN KINASE G11A-LIKE 1 113 - -
Vvi13g657 304 PANTHER PROTEIN KINASE G11A-LIKE 114 259 - -
Vvi13g657 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Vvi13g657 304 Gene3D Phosphorylase Kinase; domain 1 2 257 - -
Vvi13g657 304 Pfam Protein kinase domain 2 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g657 304 Gene3D Transferase(Phosphotransferase) domain 1 31 254 - -
Vvi13g657 304 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g657 304 SMART serkin_6 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1012 Vvi13g657 ECH
Vvi6g1179 Vvi13g657 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76173 PF00069 Pkinase 2.40E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g657 - K08286 vvi:100254087 523.857