Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g68 ATGGAGGATCGCTACTCGGCTGATGTTGATCTCGGAGGAGATTCTAAACAGGCTTTCTTTGGTGTTTTTGATGGGCATGGAGGAGCAAAAGCTGCTGATTTTGCAGCAAAGAACATTACTAAGAATGTGATGGCTGAAGTGACAAAGAAAGGGGATGAAGGAATCGAGGTGGCAATAAAAAATGGTTACCTGGCCACTGATGCAGAGTTTTTGAAGGAAGATGTTAGTGGTGGTTCTTGCTGTGTGACTGCATTGATTCGGGAAGGTGAACTTCATGTCTCAAATGCAGGTGATTGTCGTGCTGTTATGAGCAGAGGAGGAATTGCTGAAGCCCTCACATCTGATCACCGACCTTCAAGGGAAGATGAAATGGATAGGATTCAAACTCTGGGTGGATATGTGGACCGTTGCCATGGTGTTTGGAGAATACAGGGTTCTCTTGCTGTGTCAAGAGGAATTGGAGACAGAAATCTTAAACAATGGGTAACAGCAGAACCAGAGACAAAAAGTTTAAAGATAAAACCCGAATGCGAGTTCTTAATCCTAGCTTCTGATGGCCTATGGGACAAGGTTACAAATCAGGAAGCAGTAGATGTAGTCCGGCCTTTATGCATAGGAGTTGATAAGCCAGAGCCATTTTCTGCTTGTAAAAATCTTGCTCGCCTGGCAATAAGGGGAGGCTCCACGGATGATATAAGTGTGATGGTAATCCAGTTAAGTCACTTCCTTTCATGA 735 44.22 MEDRYSADVDLGGDSKQAFFGVFDGHGGAKAADFAAKNITKNVMAEVTKKGDEGIEVAIKNGYLATDAEFLKEDVSGGSCCVTALIREGELHVSNAGDCRAVMSRGGIAEALTSDHRPSREDEMDRIQTLGGYVDRCHGVWRIQGSLAVSRGIGDRNLKQWVTAEPETKSLKIKPECEFLILASDGLWDKVTNQEAVDVVRPLCIGVDKPEPFSACKNLARLAIRGGSTDDISVMVIQLSHFLS* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 727896 730234 + Vvi13g68 Vvi13g68 773854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g68 244 CDD PP2Cc 1 239 IPR001932 -
Vvi13g68 244 SMART PP2C_SIG_2 4 239 IPR001932 -
Vvi13g68 244 Gene3D - 1 243 IPR036457 -
Vvi13g68 244 ProSitePatterns PPM-type phosphatase domain signature. 19 27 IPR000222 GO:0043169
Vvi13g68 244 PANTHER PROTEIN PHOSPHATASE 2C 30-RELATED 1 242 - -
Vvi13g68 244 PANTHER PROTEIN PHOSPHATASE 2C 1 242 IPR015655 GO:0004722|GO:0006470
Vvi13g68 244 ProSiteProfiles PPM-type phosphatase domain profile. 1 239 IPR001932 -
Vvi13g68 244 SMART PP2C_4 1 237 IPR001932 -
Vvi13g68 244 SUPERFAMILY PP2C-like 1 240 IPR036457 -
Vvi13g68 244 Pfam Protein phosphatase 2C 12 232 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g649 Vvi13g68 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g68 K17506 - vvi:100248525 493.041