Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g723 ATGGGCGCTTTGACTTTTGTGGGAAACACGCCTTTCCCGCCAAGACACCCACCACTCCCAAATTTCCCGCCATATTTTGACTTACCATTTAAAAGCCCTGACATCGATCGATTTTTCCGTCGACAATTTGAAGATTTCAGAAGAAAAAGCTTGTGTTGGGATATGGATACATCAAGCCCTGCAGTGTTTGTCAACGCAGAGTTGTTGCGAACGTATGTAGGGCGGAAGGTTAGGGCTGTGGTTCAAGTTATTGGATTTGATGGAGGCGTTGTGACCGGAAAATCTGTGGATGACCAGCAATTGATTATTAAGGGCTCTCCCCCATCTGTTCCTGTGATGAACTATATTGAGGTGATTGGCATTGCTGACAGTAACCAGTCCATTCGCGCTGAAATATGGACTAACTTCGGTAGCACATTTGACACACATTCATACAATCAGTTATGCCTGCTTGCAAATGGGGAATTTAAAAGTCTGTTCCTGTAG 486 44.65 MGALTFVGNTPFPPRHPPLPNFPPYFDLPFKSPDIDRFFRRQFEDFRRKSLCWDMDTSSPAVFVNAELLRTYVGRKVRAVVQVIGFDGGVVTGKSVDDQQLIIKGSPPSVPVMNYIEVIGIADSNQSIRAEIWTNFGSTFDTHSYNQLCLLANGEFKSLFL* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11113909 11119234 + Vvi13g723 Vvi13g723 774509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g723 161 CDD RPA3 60 160 - -
Vvi13g723 161 Pfam Replication factor A protein 3 55 155 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi13g723 161 SUPERFAMILY Nucleic acid-binding proteins 59 160 IPR012340 -
Vvi13g723 161 Gene3D - 55 161 IPR012340 -
Vvi13g723 161 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 55 161 - -
Vvi13g723 161 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 55 161 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g979 Vvi13g723 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g723 K10740 - vvi:100244193 214.157