Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g73 ATGGACTGTGAAGACCAAGACACCAAGCCCATTACCACCACCACCACTTCTAACGAGACTAATAGCAGCAACAGTTCTTCCGCAACCGCCGGCGCCACCAGTTGCGGTGGTGATAACGGCAGCAACGGGAATAGTAGGAAGTGTAAGGGCAAAGGAGGGCCTGATAACAGTAAGTTCAAGTACAGAGGTGTGAGACAGCGGAGTTGGGGGAAGTGGGTGGCGGAGATCCGGGAGCCTCGCAAGCGCACGCGTAAATGGCTCGGCACCTTCGCCACCGCTGAGGACGCCGCTCGAGCCTACGACCGTGCAGCCATCATTCTCTACGGCAGCAGAGCTCAGCTCAACCTCCAACCGTCCGTCTCCTCCGCCTCGTCCTCCAGCCGCGGAAGCTCGTCGTCGTCGAGCGGCACTCAAACGCTCCGCCCATTGCTCCCTCGTCCATCTGGGTTCGGCCTCACTTTCTCTTCTCCCTCTGCCACCCCGCACACGGCGGGGGGATACGTGCCGTACGGGTTCAGCCACGGTATGGATTCGTCCGTACTATGTGGAAACGTGGTGCAGAGTCAACAGCAACTGGTGCAACAGCAGCATCAGCTGCTATATCCACCGACCACTGCACCATCATGGTCATGCCAAGACAGTGAAGCCTCTGCAGAGCTCAAGCTCATAGTGATGGCTGTAATGCTTGGAACCAGCATTGTGAGCATCTCTTCACCTTTGATTTTCTCTCATTTCATTCACTGGAAGCCCATTCACAGTAAACTTCTTCTAGCTATCAAATGCTTGGCAGCTGGTGTAATTCTCTCTATTTCACTTGTCCATGTCCTTCCTCGTTCATTTGATTCCCTCTCCGACTGCCAAGTCGTGTCCCTCCGTCCATGGAAGGACTTACCCTTCTCGGGTATTGTTCCGATCATCGGAGCAGTCACGGCATTGCTGGTGGATATCATGCAGAGTTGTTATGGGAATGATAAGAGCAGTCACTATGCGCCCGTGAAGACACACGAGGATTCTTCTTCTGATGGGAAGAAAACTGTGACTACTCAATTTGAAATGGGGATAATGGGGTGGCATGATCGGCAAGCGGAGGAGATGGCGAAACTGAAGCAGAGGCTGGTTGCTCAAGTTTTGGAGATTGGGGTAGTGTTCTACCCGGTGATTATAGGGCTGATGACGGGAGTTTCTCACAACCTTTGCACCGTAAAAGCTCTGGTTGCTGCCCTGGTGCTTCACCATTTCTTTGAAGGAATAGAGCTAGGTGGCTGCATGGCACAGGCAGGCTTGAACTTCGGAACAACAGCATATATGTGCATCGTGTTTTCAGTAACTGCACCAATTGGGATGGTTTTGGGCATGATATTATATACAGCCACTGGTTATGAGCCCAGAAGCGCCAATGCCTTGATCATGGAAGGAATATCGGGGTCTCTAGCGTCTGGCATACTGCTATACATGGCGTTTGTCAAATTTACAGCGGTTGAATTCTTCTACAGCAAGGTGATGATGGGGTCTAGGCCATGGATGAAGAAGCTGTGCTTCTTTCTTTTTGTTGTTGGGTGTGCTTCTATGGCATTTCTCATCATCTGGGACAGCATGCCTTCGGTGAAAAGCTTGGCCTCTGCCCCTCTGGATTGTGGTGCCTCAACAGGTGATTGTAGAAGTGGGATGTCAGCCTACATGATCACTGGAGGCAAATCCTTGCAGAAGTTCCATAACACAGTTTGTCCCGACTGCAAACCCATCAGGACCGTCGATGATAACAGCGGTGCCGAAGTCCGGCGACTCTGCTCCTCATGTCGCTCAGTTCCATCTCCGGCGGGAACTTGGGCAATCCGAACAAGCAGGCGTGCTTCTTCAACCTCGCCGGCGACTCCAAGATGCAGGATTCTAACTCTGTATTTTTCATTTTCAATGAGACCTCCTCATGACTCATGGTTAATGACCTACTCCCACTGCTCCTTGTTTTTGGTTGGAGTATAA 1980 51.82 MDCEDQDTKPITTTTTSNETNSSNSSSATAGATSCGGDNGSNGNSRKCKGKGGPDNSKFKYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSVSSASSSSRGSSSSSSGTQTLRPLLPRPSGFGLTFSSPSATPHTAGGYVPYGFSHGMDSSVLCGNVVQSQQQLVQQQHQLLYPPTTAPSWSCQDSEASAELKLIVMAVMLGTSIVSISSPLIFSHFIHWKPIHSKLLLAIKCLAAGVILSISLVHVLPRSFDSLSDCQVVSLRPWKDLPFSGIVPIIGAVTALLVDIMQSCYGNDKSSHYAPVKTHEDSSSDGKKTVTTQFEMGIMGWHDRQAEEMAKLKQRLVAQVLEIGVVFYPVIIGLMTGVSHNLCTVKALVAALVLHHFFEGIELGGCMAQAGLNFGTTAYMCIVFSVTAPIGMVLGMILYTATGYEPRSANALIMEGISGSLASGILLYMAFVKFTAVEFFYSKVMMGSRPWMKKLCFFLFVVGCASMAFLIIWDSMPSVKSLASAPLDCGASTGDCRSGMSAYMITGGKSLQKFHNTVCPDCKPIRTVDDNSGAEVRRLCSSCRSVPSPAGTWAIRTSRRASSTSPATPRCRILTLYFSFSMRPPHDSWLMTYSHCSLFLVGV* 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 782569 793285 - Vvi13g73 Vvi13g73 773859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g73 659 CDD AP2 60 117 IPR001471 GO:0003700|GO:0006355
Vvi13g73 659 MobiDBLite consensus disorder prediction 1 62 - -
Vvi13g73 659 PANTHER ZINC TRANSPORTER 6, CHLOROPLASTIC 205 529 - -
Vvi13g73 659 MobiDBLite consensus disorder prediction 119 142 - -
Vvi13g73 659 MobiDBLite consensus disorder prediction 8 46 - -
Vvi13g73 659 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Vvi13g73 659 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Vvi13g73 659 PANTHER ZINC/IRON TRANSPORTER 205 529 - -
Vvi13g73 659 Pfam AP2 domain 60 108 IPR001471 GO:0003700|GO:0006355
Vvi13g73 659 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vvi13g73 659 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Vvi13g73 659 Pfam ZIP Zinc transporter 219 526 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi13g73 659 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Vvi13g73 659 Gene3D AP2/ERF domain 60 117 IPR036955 GO:0003700|GO:0006355
Vvi13g73 659 TIGRFAM zip: ZIP zinc/iron transport family 210 529 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g659 Vvi13g73 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13913 PF02535 Zip 7.30E-45 CL0184 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g73 K14709 - vvi:100267220 652.129