Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g75 ATGGCTTCAAGAGCAGTTGTTCCACGAGACCATCAACAACCCAGAGGGGAGGCAGTTGCTGGGAATGGTAAGCAGAAGAAGATTGTTGCAGCAGAGAGGAGAAACCGGCAAGCACTAGGCGATATTGGGAATCTTGTAACTATTGGAGTTGATGGCAAGCCACAGCCTCAGATCTCTCGCCCCATTACAAGGGGTTTCTGTGCACAATTACTCGCCAAAGCAAAAGAAGCTGAAAACAACAAGAAAGCAGTCCGTGCTAATGTGGATGGAGCTCAACTCCGTGCTAATGTGGATGGAGCTCTTCTTGTTACCAATGGAGCTGCAGCAGGTAAAGGACCTGAGGCAGAAAAGGCAGCTCAGAAGAAGGTTGCAGTCAAGACAAAGCCTGAGGCAGTGATTGAATTGAGCTCAGATACAGAAGAGGTTAAGAAAGAGAAGCCAATAAACACCAAAAAGACCGGAGAAGGATCCTCGAGGAAGAAAGTCCAGACTATGACTTCCATCCTTACTTCTAGGAGCAAGGCAGCTTGTGGTTTGACCGATAAAAAACCGAAGGAGCAGATTGTTGATATTGATGCAGCTGATGCTAATAATGAGTTGGCTGTGGTAGAATACGTTGAGGACATTTATAAGTTCTACAAACTGATTGAGAGTGAGAGCCACATTCATGACTATATGGACTCCCAGCCTGAGATGAATGAGAAGATGAGATCAATTCTGGTGGATTGGTTAATTGAAGTTCACCATAAATTTGAACTTATGCCAGAGACCCTCTACCTTACAATCAACATAATCGACCGGTTCCTTTCAGTCAAGACTGTGCCAAGGAGGGAACTGCAGTTGGTAGGCATCAGTGCCATGCTGATAGCCTCCAAATACGAAGAAATTTGGGCCCCAGAGGTCAATGACTTTGTCTGCATCTCAGACAGAGCTTATAGTGATCAGCAGATAAGGAACATGGAGAAAGCTATACTGGGCAGGCTAGAATGGACCTTGACAGTTCCGACGCCTTATGTTTTCCTTGTTCGTTTCATTAAGGCCTCCATTCCTGATCAGGAGATGGAACATATGGTCTACTTCTATGCTGAACTTGGCTTGGCTAACTATGCCACCATGATGTACTGCTCATCTATGTTTGCTGCCTCATCGGTGTATGCTGCGCGGTGTGCCCTGAACAAAAGCCCTGTTTGGGATGAAACACTAAAAGCCTATACTGGTTTCTCAGAAGCACAGCTACTGGATTGTGCTAAGCTCCTTGCAAGTTTCCACTCAATGGCTGCAGAAAACAAGCTGATCAAGGCTGTGTATAGGAAGTACTCTCAGCCTCATAGAAGTGGGGTTGCATTTCGTCCACCAGCCAAGGTCCTCTTGGCTGCTGCTGCATCATGA 1389 46.22 MASRAVVPRDHQQPRGEAVAGNGKQKKIVAAERRNRQALGDIGNLVTIGVDGKPQPQISRPITRGFCAQLLAKAKEAENNKKAVRANVDGAQLRANVDGALLVTNGAAAGKGPEAEKAAQKKVAVKTKPEAVIELSSDTEEVKKEKPINTKKTGEGSSRKKVQTMTSILTSRSKAACGLTDKKPKEQIVDIDAADANNELAVVEYVEDIYKFYKLIESESHIHDYMDSQPEMNEKMRSILVDWLIEVHHKFELMPETLYLTINIIDRFLSVKTVPRRELQLVGISAMLIASKYEEIWAPEVNDFVCISDRAYSDQQIRNMEKAILGRLEWTLTVPTPYVFLVRFIKASIPDQEMEHMVYFYAELGLANYATMMYCSSMFAASSVYAARCALNKSPVWDETLKAYTGFSEAQLLDCAKLLASFHSMAAENKLIKAVYRKYSQPHRSGVAFRPPAKVLLAAAAS* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 806476 809493 - Vvi13g75 Vvi13g75 773861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g75 462 ProSitePatterns Cyclins signature. 237 268 IPR006671 -
Vvi13g75 462 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 23 458 - -
Vvi13g75 462 MobiDBLite consensus disorder prediction 137 164 - -
Vvi13g75 462 SUPERFAMILY Cyclin-like 334 454 IPR036915 -
Vvi13g75 462 Coils Coil 67 94 - -
Vvi13g75 462 CDD CYCLIN 236 325 IPR013763 -
Vvi13g75 462 Gene3D - 208 448 - -
Vvi13g75 462 Pfam Cyclin, C-terminal domain 335 451 IPR004367 -
Vvi13g75 462 Gene3D - 222 333 - -
Vvi13g75 462 SUPERFAMILY Cyclin-like 197 332 IPR036915 -
Vvi13g75 462 SMART Cyclin_C_2 335 453 IPR004367 -
Vvi13g75 462 PANTHER CYCLINS 23 458 IPR039361 -
Vvi13g75 462 CDD CYCLIN 333 419 IPR013763 -
Vvi13g75 462 MobiDBLite consensus disorder prediction 1 27 - -
Vvi13g75 462 Pfam Cyclin, N-terminal domain 208 332 IPR006671 -
Vvi13g75 462 PIRSF Cyclin_A_B_D_E 1 462 IPR039361 -
Vvi13g75 462 MobiDBLite consensus disorder prediction 137 158 - -
Vvi13g75 462 SMART cyclin_7 242 326 IPR013763 -
Vvi13g75 462 SMART cyclin_7 339 421 IPR013763 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g75 K21777 - vvi:100253549 874.774