Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g761 | ATGGGATCTGAAACAGCACTTCCCAAATGGGCATCAGAGCCTTGCATGATGGGCATTGATGAAGCTGGACGTGGCCCTGTCTTAGGCCCAATGGTTTATGGATGCTTGTACTGTGCCCGCTCATACCACAACACCCTTTCTACATTGAACTTTGCAGATTCAAAGACTCTAAAAGAAGAGAAGAGGGAGGAATTGTTTGAAAATTTAAAGGCTGATGAATCCATTGGATGGGCTGTTGATGTCATAGATCCATGGGAGCTCTCAGCTAAAATGCTAAAGAAAAACAAGATAAATCTAAATGAAATATCTCATGACTCTGCAATTGGCCTCATCACTAGGGTCCTAAACATGGGAGTTCTTTTAACTGAGGTTTACGTGGACACAGTGGGAGATGCAGAGAAGTATAGGATTAAACTGTCTGAAAGATTTCCTGCTGTCAAATTTGTTGTTGCAAAGAAAGCTGATAGTCTTTATCCTGTTGTAAGTGGAGCAAGCATAGTTGCAAAGGTGACAAGAGACCGAGCCCTACGAGATTGGGTGCTGGTTGAAACTGCTGAAAATATGCATAGGAACTTTGGATCTGGATATCCTGGAGATCCTGTAACTAAGTCCTGGTTGCAACATCACAAACACTCGGTATTTGGATTTCCGACTCTGGTTCGTTTCAGTTGGGGTACGTGCACTGCCTACTCCAAAGACATTGTTGAAGTACTATGGGAGGCTGATAAAGTTGAGGAAGACGGTTCCACTAATAGGAATGGTAAGCGGCAGTTAAAATTGAGCAGTGTTGGTTTCATTGAAAGCAAGAGGAAGAGCGAAGAAATTGAATCAAGTGGTAAAGGTCGTTGCAAGTTTTTTCAGGCTCGTAAACTTGAGCAACTTACTCAGTTCTGA | 894 | 42.73 | MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWEADKVEEDGSTNRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF* | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 12791678 | 12828448 | - | Vvi13g761 | Vvi13g761 | 774547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g761 | 297 | Pfam | Ribonuclease HII | 17 | 227 | IPR024567 | GO:0004523 | |
Vvi13g761 | 297 | SUPERFAMILY | Ribonuclease H-like | 15 | 230 | IPR012337 | - | |
Vvi13g761 | 297 | TIGRFAM | TIGR00729: ribonuclease HII | 16 | 228 | IPR004649 | GO:0004523|GO:0016070 | |
Vvi13g761 | 297 | ProSiteProfiles | Ribonuclease (RNase) H type-2 domain profile. | 14 | 236 | IPR024567 | GO:0004523 | |
Vvi13g761 | 297 | PANTHER | RIBONUCLEASE | 5 | 297 | - | - | |
Vvi13g761 | 297 | PANTHER | RIBONUCLEASE H2 SUBUNIT A | 5 | 297 | IPR001352 | GO:0003723|GO:0004523 | |
Vvi13g761 | 297 | Gene3D | - | 3 | 186 | IPR036397 | GO:0003676 | |
Vvi13g761 | 297 | CDD | RNase_HII_eukaryota_like | 17 | 236 | - | - | |
Vvi13g761 | 297 | Gene3D | Ribonuclease hii. Domain 2 | 187 | 233 | IPR023160 | GO:0004523 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g761 | K10743 | - | vvi:100260143 | 595.504 |