Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g761 ATGGGATCTGAAACAGCACTTCCCAAATGGGCATCAGAGCCTTGCATGATGGGCATTGATGAAGCTGGACGTGGCCCTGTCTTAGGCCCAATGGTTTATGGATGCTTGTACTGTGCCCGCTCATACCACAACACCCTTTCTACATTGAACTTTGCAGATTCAAAGACTCTAAAAGAAGAGAAGAGGGAGGAATTGTTTGAAAATTTAAAGGCTGATGAATCCATTGGATGGGCTGTTGATGTCATAGATCCATGGGAGCTCTCAGCTAAAATGCTAAAGAAAAACAAGATAAATCTAAATGAAATATCTCATGACTCTGCAATTGGCCTCATCACTAGGGTCCTAAACATGGGAGTTCTTTTAACTGAGGTTTACGTGGACACAGTGGGAGATGCAGAGAAGTATAGGATTAAACTGTCTGAAAGATTTCCTGCTGTCAAATTTGTTGTTGCAAAGAAAGCTGATAGTCTTTATCCTGTTGTAAGTGGAGCAAGCATAGTTGCAAAGGTGACAAGAGACCGAGCCCTACGAGATTGGGTGCTGGTTGAAACTGCTGAAAATATGCATAGGAACTTTGGATCTGGATATCCTGGAGATCCTGTAACTAAGTCCTGGTTGCAACATCACAAACACTCGGTATTTGGATTTCCGACTCTGGTTCGTTTCAGTTGGGGTACGTGCACTGCCTACTCCAAAGACATTGTTGAAGTACTATGGGAGGCTGATAAAGTTGAGGAAGACGGTTCCACTAATAGGAATGGTAAGCGGCAGTTAAAATTGAGCAGTGTTGGTTTCATTGAAAGCAAGAGGAAGAGCGAAGAAATTGAATCAAGTGGTAAAGGTCGTTGCAAGTTTTTTCAGGCTCGTAAACTTGAGCAACTTACTCAGTTCTGA 894 42.73 MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWEADKVEEDGSTNRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12791678 12828448 - Vvi13g761 Vvi13g761 774547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g761 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Vvi13g761 297 SUPERFAMILY Ribonuclease H-like 15 230 IPR012337 -
Vvi13g761 297 TIGRFAM TIGR00729: ribonuclease HII 16 228 IPR004649 GO:0004523|GO:0016070
Vvi13g761 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Vvi13g761 297 PANTHER RIBONUCLEASE 5 297 - -
Vvi13g761 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 297 IPR001352 GO:0003723|GO:0004523
Vvi13g761 297 Gene3D - 3 186 IPR036397 GO:0003676
Vvi13g761 297 CDD RNase_HII_eukaryota_like 17 236 - -
Vvi13g761 297 Gene3D Ribonuclease hii. Domain 2 187 233 IPR023160 GO:0004523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g761 K10743 - vvi:100260143 595.504